Package: GeneticsBase
Title: Classes and functions for handling genetic data
Version: 1.6.0
Author: Gregory Warnes <warnes@bst.rochester.edu> Ross Lazarus
        <ross.lazarus@channing.harvard.edu> Scott D Chasalow
        <scott.chasalow@bms.com> Giovanni Montana
        <giovanni.montana@bms.com> Michael O'Connell
        <moconnell@insightful.com> Junsheng Cheng
        <jcheng8@users.sourceforge.net> Nitin Jain
        <nitin.jain@pfizer.com>
Maintainer: Gregory Warnes <warnes@bst.rochester.edu>
Depends: R (>= 2.3.1), methods, combinat, xtable, mvtnorm, haplo.stats
Imports: gdata (>= 2.3.0), gplots (>= 2.3.1), gtools (>= 2.2.3), MASS
Description: The R Genetics Project is a collaborative effort to
        develop a complete set of tools for storing, accessing,
        manipulating, and analyzing genetics data, from small
        candidate-gene studies consisting of a few genetic markers to
        large whole-genome studies containing hundreds of thousands of
        markers.  This package (GeneticsBase) provides a foundation of
        efficient data structures and easy-to-use manipulation
        functions.
biocViews: Genetics
License: LGPL
LazyLoad: true
ZipData: No
Collate: First.lib.R LD-class.R LDband-class.R LDdist-class.R
        diseq-class.R geneSet-class.R geneSet-methods.R HWE.geneSet.R
        LD.R LDband.R LDdist.R alleleCount.R alleleFreq.R carrier.R
        diseq.inner.R dominant.R extractAlleles.R factor.geneSet.R
        genotypeLevels.R heterozygote.R homozygote.R
        missingCodes.geneSet.R plot.LD.R recessive.R showGeneSet.R
        subset.geneSet.R transTables.geneSet.R html.R print.LD.R
        HWE.chisq.R HWE.exact.R Armitage.R LDView.R PGtables.R
        alleleSummary.R assert.R binsearch.R ci.balance.R convert.R
        decodeCallCodes.R desMarkers.R diseq.ci.R diseq.table.R
        fastGrid.R founderGeneSet.R geneflag.R genotypeSummary.R
        getLD.R gregorius.R haplo.stats.wrapers.R makeCCodesAndTables.R
        makeMarkerInfo.R makeTransTable.R makeTransTableList.R
        markerSummary.R onLoad.R ped2geneSet.R geneSet2Ped.R
        read.pfizer.Listing.R read.pfizer.Pivot.R read.phe.R
        readGenes.Pfizer.R readGenes.R readGenes.ped.R
        readGenes.perlegen.R writeSummary.R as.geneSet.R
Packaged: Mon May 12 03:55:25 2008; biocbuild
Built: R 2.7.0; i386-pc-mingw32; 2008-05-12 08:27:20; windows
