as.data.frame.profileCGH {GLAD} | R Documentation

## profileCGH consercion

### Description

Convert a profileCGH object into a data.frame.

### Usage

    ## S3 method for class 'profileCGH':
    as.data.frame(x, row.names = NULL, optional = FALSE, ...)

### Arguments

`x` | The object to converted into data.frame.
`row.names` | NULL or a character vector giving the row names for the data frame. Missing values are not allowed.
`optional` | logical. If 'TRUE', setting row names and converting column names (to syntactic names) is optional.
`...` |

### Details

The attributes `profileValues` and `profileValuesNA` are binded into a data.frame.

### Value

A data.frame object

### Note

People interested in tools dealing with array CGH analysis can visit our web-page http://bioinfo.curie.fr.

### Author(s)

Philippe Hupé, glad@curie.fr

### See Also

`as.profileCGH`

### Examples

    data(snijders)

    ### Creation of "profileCGH" object
    profileCGH <- as.profileCGH(gm13330)

    ###########################################################
    ###
    ###  glad function as described in Hupé et al. (2004)
    ###
    ###########################################################

    res <- glad(profileCGH, mediancenter=FALSE,
                    smoothfunc="lawsglad", bandwidth=10, round=2,
                    model="Gaussian", lkern="Exponential", qlambda=0.999,
                    base=FALSE,
                    lambdabreak=8, lambdacluster=8, lambdaclusterGen=40,
                    type="tricubic", param=c(d=6),
                    alpha=0.001, msize=5,
                    method="centroid", nmax=8,
                    verbose=FALSE)

    res <- as.data.frame(res)

[Package GLAD version 1.16.0 Index]