\HeaderA{HMworkflow}{function to bind together
HapMap genotyping results and expression data}{HMworkflow}
\keyword{models}{HMworkflow}
\begin{Description}\relax
function to bind together
genotyping results and expression data
\end{Description}
\begin{Usage}
\begin{verbatim}
HMworkflow(gzfn, emat, pd, mi, anno)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{gzfn}] path to gzipped genotyping results 
\item[\code{emat}] matrix of conforming expression results
(colnames match some of those in gzfn) 
\item[\code{pd}] \code{\LinkA{phenoData}{phenoData}} instance 
\item[\code{mi}] \code{\LinkA{MIAME}{MIAME}} instance
\item[\code{anno}] string indicating platform, such as
\code{"hgfocus"}
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
builds a \code{\LinkA{racExSet-class}{racExSet.Rdash.class}} instance
\end{Details}
\begin{Value}
builds a \code{\LinkA{racExSet-class}{racExSet.Rdash.class}} instance
\end{Value}
\begin{Author}\relax
Vince Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
data(chr20GGdem)
fi = system.file("fileDemos/geno20demo.txt.gz", package="GGtools")
HMworkflow(fi, exprs(chr20GGdem)[1:100,],
  phenoData(chr20GGdem), experimentData(chr20GGdem),
  "hgfocus")
\end{ExampleCode}
\end{Examples}

