\HeaderA{topSnps-methods}{report on the smallest p-values for SNP-expression associations}{topSnps.Rdash.methods}
\aliasA{topSnps}{topSnps-methods}{topSnps}
\aliasA{topSnps,cwSnpScreenResult-method}{topSnps-methods}{topSnps,cwSnpScreenResult.Rdash.method}
\aliasA{topSnps,gwSnpScreenResult-method}{topSnps-methods}{topSnps,gwSnpScreenResult.Rdash.method}
\keyword{methods}{topSnps-methods}
\begin{Description}\relax
report on the smallest p-values for SNP-expression associations
\end{Description}
\begin{Section}{Methods}
\describe{

\item[x = "cwSnpScreenResult"] return a data frame with the
smallest p-values.  An optional argument \code{which = 'p.2df'} allows
selection of 2-d.f. test results.
\item[x = "gwSnpScreenResult"] return a list of chromosome-specific
data frames with the
smallest p-values.  An optional argument \code{which = 'p.2df'} allows
selection of 2-d.f. test results.
}
\end{Section}
\begin{Examples}
\begin{ExampleCode}
 data(hmceuB36.2021)
 g1 = gwSnpScreen(genesym("CPNE1"), hmceuB36.2021, chrnum(20))
 topSnps(g1)
\end{ExampleCode}
\end{Examples}

