plot_EvG-methods           package:GGtools           R Documentation

_p_l_o_t _e_x_p_r_e_s_s_i_o_n _v_s. _g_e_n_o_t_y_p_e

_D_e_s_c_r_i_p_t_i_o_n:

     plot expression vs. genotype ; getAlleles is supporting
     infrastructure that may have additional uses

_M_e_t_h_o_d_s:


     _g_s_y_m = "_g_e_n_e_s_y_m", _r_s_n = "_r_s_N_u_m", _s_m_s = "_s_m_l_S_e_t" displays
          distributions of gene expression values for gene identified
          by 'gsym' (which must be a symbol identified in the
          [platform]SYMBOL AnnDbBimap for the  smlSet annotation)
          stratified by SNP genotype  for SNP identified by 'rsn'.

     _g_e_t_A_l_l_e_l_e_s(_s_m_s="_s_m_l_S_e_t", _r_s_n="_r_s_N_u_m") return character tokens
          describing subject-specific genotypes

_E_x_a_m_p_l_e_s:

     data(hmceuB36.2021)
     plot_EvG( genesym("CPNE1"), rsNum("rs6060535"), hmceuB36.2021 )
     getAlleles(hmceuB36.2021, rsNum("rs6060535"))[1:5]

