snpLocNCref-class {GGtools} | R Documentation

## Class "snpLocNCref" container for netCDF reference to snp location data

### Description

Class "snpLocNCref" container for netCDF reference to snp location data

### Objects from the Class

Objects can be created by calls of the form `new("snpLocNCref", ...)`. They extend class character.

### Slots

`.Data`:
  Object of class `"character"` intended to be the pathname of the netCDF store for snp location information. This store will have two variables: chr (integer denoting chromosome, in humans 23=X, 24=Y), and cumloc (numeric cumulative base pair count to SNP location).

### Extends

Class `"character"`, from data part. Class `"vector"`, by class "character", distance 2. Class `"characterORMIAME"`, by class "character", distance 2.

### Methods

getSnpData
  `signature(x = "snpLocNCref")`: returns list with elements `chr` and `cumloc`
show
  `signature(object = "snpLocNCref")`: returns concise string as pathname may be long.

### Author(s)

VJ Carey <stvjc@channing.harvard.edu>

### Examples

    showClass("snpLocNCref")

[Package GGtools version 2.0.2 Index]