genoStrings             package:GGtools             R Documentation

_c_r_e_a_t_e _a _c_h_a_r_a_c_t_e_r _v_e_c_t_o_r _o_f _g_e_n_o_t_y_p_e _v_a_l_u_e _s_t_r_i_n_g_s

_D_e_s_c_r_i_p_t_i_o_n:

     create a character vector of genotype value strings

_U_s_a_g_e:

     genoStrings(racExSet, rsnum)

_A_r_g_u_m_e_n_t_s:

racExSet: instance of 'racExSet-class'

   rsnum: string that is a rowname in snps(racExSet)

_D_e_t_a_i_l_s:

     computes unphased genotype code from the rare allele count and
     other metadata in the racExSet

_V_a_l_u_e:

     character vector

_N_o_t_e:

     For interoperability with the genetics package, e.g., 'genotype'

_A_u_t_h_o_r(_s):

     Vince Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     data(chr20GGdem)
     genoStrings(chr20GGdem, "rs6060535")

