topSnps-methods           package:GGtools           R Documentation

_r_e_p_o_r_t _o_n _t_h_e _s_m_a_l_l_e_s_t _p-_v_a_l_u_e_s _f_o_r _S_N_P-_e_x_p_r_e_s_s_i_o_n _a_s_s_o_c_i_a_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     report on the smallest p-values for SNP-expression associations

_M_e_t_h_o_d_s:



     _x = "_c_w_S_n_p_S_c_r_e_e_n_R_e_s_u_l_t" return a data frame with the smallest
          p-values.  An optional argument 'which = 'p.2df'' allows
          selection of 2-d.f. test results.

     _x = "_g_w_S_n_p_S_c_r_e_e_n_R_e_s_u_l_t" return a list of chromosome-specific data
          frames with the smallest p-values.  An optional argument
          'which = 'p.2df'' allows selection of 2-d.f. test results.

_E_x_a_m_p_l_e_s:

      data(hmceuB36.2021)
      g1 = gwSnpScreen(genesym("CPNE1"), hmceuB36.2021, chrnum(20))
      topSnps(g1)

