HMworkflow              package:GGtools              R Documentation

_f_u_n_c_t_i_o_n _t_o _b_i_n_d _t_o_g_e_t_h_e_r
_H_a_p_M_a_p _g_e_n_o_t_y_p_i_n_g _r_e_s_u_l_t_s _a_n_d _e_x_p_r_e_s_s_i_o_n _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     function to bind together genotyping results and expression data

_U_s_a_g_e:

     HMworkflow(gzfn, emat, pd, mi, anno)

_A_r_g_u_m_e_n_t_s:

    gzfn: path to gzipped genotyping results 

    emat: matrix of conforming expression results (colnames match some
          of those in gzfn) 

      pd: 'phenoData' instance 

      mi: 'MIAME' instance

    anno: string indicating platform, such as '"hgfocus"'

_D_e_t_a_i_l_s:

     builds a 'racExSet-class' instance

_V_a_l_u_e:

     builds a 'racExSet-class' instance

_A_u_t_h_o_r(_s):

     Vince Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     data(chr20GGdem)
     fi = system.file("fileDemos/geno20demo.txt.gz", package="GGtools")
     HMworkflow(fi, exprs(chr20GGdem)[1:100,],
       phenoData(chr20GGdem), experimentData(chr20GGdem),
       "hgfocus")

