\HeaderA{make\_racExSet}{create a racExSet from simpler constituents}{make.Rul.racExSet}
\aliasA{rb20M}{make\_racExSet}{rb20M}
\aliasA{Sa20M}{make\_racExSet}{Sa20M}
\keyword{models}{make\_racExSet}
\begin{Description}\relax
create a racExSet from simpler constituents
\end{Description}
\begin{Usage}
\begin{verbatim}
make_racExSet(exprs, racs, rarebase, SNPalleles, pd, mi, anno)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{exprs}] matrix of processed expression values, GxN,
rownames are reporterNames
\item[\code{racs}] matrix of rare allele counts, SxN, rownames
are snp ids (rs numbers)
\item[\code{rarebase}] character S-vector of rare base 
\item[\code{SNPalleles}] character S-vector of strings of form "A/B" indicating
biallelic polymorphism options
\item[\code{pd}] old phenoData instance
\item[\code{mi}] MIAME instance 
\item[\code{anno}] string for annotation referencing
\end{ldescription}
\end{Arguments}
\begin{Author}\relax
Vince Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
data(litsn)
data(litex)
data(pdd)
data(rb20M)
data(Sa20M)
dem = make_racExSet( exprs=litex, racs=t(litsn), pd=pdd, mi=new("MIAME"),
  rarebase=rb20M, SNPalleles=Sa20M, anno="hgfocus")
dem
\end{ExampleCode}
\end{Examples}

