\HeaderA{snpLocNCref-class}{Class "snpLocNCref" container for netCDF reference
to snp location data}{snpLocNCref.Rdash.class}
\aliasA{getSnpData,snpLocNCref-method}{snpLocNCref-class}{getSnpData,snpLocNCref.Rdash.method}
\aliasA{show,snpLocNCref-method}{snpLocNCref-class}{show,snpLocNCref.Rdash.method}
\keyword{classes}{snpLocNCref-class}
\begin{Description}\relax
Class "snpLocNCref" container for netCDF reference
to snp location data
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{new("snpLocNCref", ...)}.
They extend class character.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{.Data}:] Object of class \code{"character"} intended
to be the pathname of the netCDF store for snp location information.
This store will have two variables: chr (integer denoting
chromosome, in humans 23=X, 24=Y), and cumloc (numeric
cumulative base pair count to SNP location). 
}
\end{Section}
\begin{Section}{Extends}
Class \code{"\LinkA{character}{character.Rdash.class}"}, from data part.
Class \code{"\LinkA{vector}{vector.Rdash.class}"}, by class "character", distance 2.
Class \code{"\LinkA{characterORMIAME}{characterORMIAME}"}, by class "character", distance 2.
\end{Section}
\begin{Section}{Methods}
\describe{
\item[getSnpData] \code{signature(x = "snpLocNCref")}: returns
list with elements \code{chr} and \code{cumloc} 
\item[show] \code{signature(object = "snpLocNCref")}: returns
concise string as pathname may be long. 
}
\end{Section}
\begin{Author}\relax
VJ Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
showClass("snpLocNCref")
\end{ExampleCode}
\end{Examples}

