make_racExSet            package:GGtools            R Documentation

_c_r_e_a_t_e _a _r_a_c_E_x_S_e_t _f_r_o_m _s_i_m_p_l_e_r _c_o_n_s_t_i_t_u_e_n_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     create a racExSet from simpler constituents

_U_s_a_g_e:

     make_racExSet(exprs, racs, rarebase, SNPalleles, pd, mi, anno)

_A_r_g_u_m_e_n_t_s:

   exprs: matrix of processed expression values, GxN, rownames are
          reporterNames

    racs: matrix of rare allele counts, SxN, rownames are snp ids (rs
          numbers)

rarebase: character S-vector of rare base 

SNPalleles: character S-vector of strings of form "A/B" indicating
          biallelic polymorphism options

      pd: old phenoData instance

      mi: MIAME instance 

    anno: string for annotation referencing

_A_u_t_h_o_r(_s):

     Vince Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     data(litsn)
     data(litex)
     data(pdd)
     data(rb20M)
     data(Sa20M)
     dem = make_racExSet( exprs=litex, racs=t(litsn), pd=pdd, mi=new("MIAME"),
       rarebase=rb20M, SNPalleles=Sa20M, anno="hgfocus")
     dem

