\HeaderA{GGfitter-class}{Class "GGfitter" wrapper for special functions to do
whole genome screens}{GGfitter.Rdash.class}
\aliasA{fastAGM}{GGfitter-class}{fastAGM}
\aliasA{fastAGMfitter}{GGfitter-class}{fastAGMfitter}
\aliasA{fastHET}{GGfitter-class}{fastHET}
\aliasA{fastHETfitter}{GGfitter-class}{fastHETfitter}
\aliasA{snpScreen,racExSet,snpMeta,genesym,formula,GGfitter,ANY-method}{GGfitter-class}{snpScreen,racExSet,snpMeta,genesym,formula,GGfitter,ANY.Rdash.method}
\keyword{classes}{GGfitter-class}
\begin{Description}\relax
wraps functions that call C code
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{new("GGfitter", ...)}.
They can be supplied as arguments to \code{\LinkA{snpScreen}{snpScreen}}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{name}:] Object of class \code{"character"} giving a name 
\item[\code{func}:] Object of class \code{"function"} the actual
function that calls C to perform the screen 
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[snpScreen] \code{signature(racExSet = "racExSet", snpMeta = "snpMeta", gene = "genesym", formTemplate = "formula", fitter = "GGfitter", gran = "ANY")}: primary usage of
this class 
}
\end{Section}
\begin{Note}\relax
Previously, deparse(substitute(fn)) was used to get information
on the fitter.  This is not reliable, and all fitting functions used
in this context will have to be reflective instances of this class.
\end{Note}
\begin{Author}\relax
VJ Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
showClass("GGfitter")
\end{ExampleCode}
\end{Examples}

