snpLocNCref-class          package:GGtools          R Documentation

_C_l_a_s_s "_s_n_p_L_o_c_N_C_r_e_f" _c_o_n_t_a_i_n_e_r _f_o_r _n_e_t_C_D_F _r_e_f_e_r_e_n_c_e
_t_o _s_n_p _l_o_c_a_t_i_o_n _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Class "snpLocNCref" container for netCDF reference to snp location
     data

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("snpLocNCref",
     ...)'. They extend class character.

_S_l_o_t_s:


     '._D_a_t_a': Object of class '"character"' intended to be the pathname
          of the netCDF store for snp location information. This store
          will have two variables: chr (integer denoting chromosome, in
          humans 23=X, 24=Y), and cumloc (numeric cumulative base pair
          count to SNP location). 

_E_x_t_e_n_d_s:

     Class '"character"', from data part. Class '"vector"', by class
     "character", distance 2. Class '"characterORMIAME"', by class
     "character", distance 2.

_M_e_t_h_o_d_s:


     _g_e_t_S_n_p_D_a_t_a 'signature(x = "snpLocNCref")': returns list with
          elements 'chr' and 'cumloc' 

     _s_h_o_w 'signature(object = "snpLocNCref")': returns concise string
          as pathname may be long. 

_A_u_t_h_o_r(_s):

     VJ Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     showClass("snpLocNCref")

