addAnno	oGtypeExSet-class
annotation,snpScreenResult-method	snpScreen
chr20GGdem	racExSet-class
chr20meta	snpMeta-class
chrnum	smlSet-class
chrnum,numeric-method	smlSet-class
chrnum-class	smlSet-class
chromosome	snpMeta-class
chromosome,snpMeta-method	snpMeta-class
cnumOrMissing-class	gwSnpScreen-methods
coerce,oGtypeExSet,ExpressionSet-method	oGtypeExSet-class
coerce,snpMeta,data.frame-method	snpMeta-class
countRare	HM2rac
cwSnpScreen	gwSnpScreen-methods
cwSnpScreenResult-class	gwSnpScreenResult-class
df2snpMeta	HM2rac
dim,snpMeta-method	snpMeta-class
exclMono	racExSet-class
exFeatID	racExSet-class
exFeatID-class	racExSet-class
exprs,racExSet-method	racExSet-class
exprs,smlSet-method	smlSet-class
extract_p	snpScreen
fastAGM	GGfitter-class
fastAGMfitter	GGfitter-class
fastHET	GGfitter-class
fastHETfitter	GGfitter-class
geneLocs	geneLocs
geneLocs_hsa	geneLocs
geneLocs_mmu	geneLocs
genesym	racExSet-class
genesym-class	racExSet-class
genoStrings	genoStrings
getAbsSnpLocs	gwSnpScreenResult-class
getAbsSnpLocs,cwSnpScreenResult-method	gwSnpScreenResult-class
getAlleles	plot_EvG-methods
getAlleles,smlSet,rsNum-method	plot_EvG-methods
getpsid	racExSet-class
getRare	HM2rac
getSnpChroms	smlSet-class
getSnpChroms,smlSet,logical-method	smlSet-class
getSnpChroms,smlSet,missing-method	smlSet-class
getSnpChroms,smlSet-method	smlSet-class
getSnpChroms,SQLiteConnection,character-method	smlSet-class
getSnpData	smlSet-class
getSnpData,character,character-method	smlSet-class
getSnpData,character-method	smlSet-class
getSnpData,snpLocNCref-method	snpLocNCref-class
getSNPindices	oGtypeExSet-class
getSnpLocs	smlSet-class
getSnpLocs,smlSet,logical-method	smlSet-class
getSnpLocs,smlSet,missing-method	smlSet-class
getSnpLocs,smlSet-method	smlSet-class
getSnpLocs,SQLiteConnection,character-method	smlSet-class
GGfitter-class	GGfitter-class
gse2031GG	racExSet-class
gwSnpScreen	gwSnpScreen-methods
gwSnpScreen,GeneSet,smlSet,cnumOrMissing-method	gwSnpScreen-methods
gwSnpScreen,genesym,smlSet,cnumOrMissing-method	gwSnpScreen-methods
gwSnpScreen,genesym,smlSet-method	gwSnpScreen-methods
gwSnpScreen-methods	gwSnpScreen-methods
gwSnpScreenResult-class	gwSnpScreenResult-class
hgfocusSYMMEMO	racExSet-class
HM2rac	HM2rac
hmceuB36.2021	smlSet-class
HMworkflow	HMworkflow
imputeSNPFixed	racExSet-class
imputeSNPFixed,racExSet,missing-method	racExSet-class
imputeSNPFixed,racExSet,numeric-method	racExSet-class
INB34snpMeta	Strains2rac
INBREDSworkflow	Strains2rac
initialize,oGtypeExSet-method	oGtypeExSet-class
initialize,racExSet-method	racExSet-class
litex	racExSet-class
litsn	racExSet-class
make_racExSet	make_racExSet
mgu74av2SYMMEMO	racExSet-class
multiGwSnpScreenResult-class	gwSnpScreenResult-class
nrow,snpMeta-method	snpMeta-class
nsamp	smlSet-class
nsamp,smlSet-method	smlSet-class
oGtypeExSet-class	oGtypeExSet-class
oneFit	racExSet-class
oneFit,racExSet,character,character,function-method	racExSet-class
oneFit,racExSet,genesym,character,function-method	racExSet-class
oneFit,racExSet,list,character,function-method	racExSet-class
oneFit,racExSet,list,formula,function-method	racExSet-class
oneFit,racExSet-method	racExSet-class
pdd	racExSet-class
plot,cwSnpScreenResult,ANY-method	gwSnpScreenResult-class
plot,cwSnpScreenResult-method	gwSnpScreenResult-class
plot,gwSnpScreenResult,ANY-method	gwSnpScreenResult-class
plot,gwSnpScreenResult-method	gwSnpScreenResult-class
plot_EvG	plot_EvG-methods
plot_EvG,genesym,rsNum,smlSet-method	plot_EvG-methods
plot_EvG-methods	plot_EvG-methods
plot_mlp	snpScreen
pos	snpMeta-class
pos,snpMeta-method	snpMeta-class
racAssays	racExSet-class
racAssays,racExSet-method	racExSet-class
racExSet	racExSet-class
racExSet-class	racExSet-class
rarebase	racExSet-class
rarebase,racExSet-method	racExSet-class
rawSNP	smlSet-class
rawSNP,smlSet,numeric-method	smlSet-class
rb20M	make_racExSet
rsNum	smlSet-class
rsNum,character-method	smlSet-class
rsNum-class	smlSet-class
Sa20M	make_racExSet
sampleNames,smlSet-method	smlSet-class
show,gwSnpScreenResult-method	gwSnpScreenResult-class
show,multiGwSnpScreenResult-method	gwSnpScreenResult-class
show,oGtypeExSet-method	oGtypeExSet-class
show,racExSet-method	racExSet-class
show,smlSet-method	smlSet-class
show,snpLocNCref-method	snpLocNCref-class
show,snpMeta-method	snpMeta-class
show,snpScreenResult-method	snpScreen
show,twSnpScreenResult-method	snpScreen
smlEnv,smlSet-method	smlSet-class
smList	smlSet-class
smList,smlSet-method	smlSet-class
smlSet-class	smlSet-class
SNPalleles	racExSet-class
SNPalleles,racExSet-method	racExSet-class
snpID	racExSet-class
snpID-class	racExSet-class
snpLocNCref-class	snpLocNCref-class
snpMeta-class	snpMeta-class
snpMetaWhole	snpMeta-class
snpMetaWhole-class	snpMeta-class
snpNames	racExSet-class
snpNames,racExSet-method	racExSet-class
snps	snps
snps,racExSet,missing-method	snps
snps,racExSet-method	racExSet-class
snps,smlSet,chrnum-method	snps
snps3PrimeTo	racExSet-class
snps5PrimeTo	racExSet-class
snpScreen	snpScreen
snpScreen,racExSet,snpMeta,genesym,formula,function,missing-method	snpScreen
snpScreen,racExSet,snpMeta,genesym,formula,function,numeric-method	snpScreen
snpScreen,racExSet,snpMeta,genesym,formula,GGfitter,ANY-method	GGfitter-class
snpScreen,racExSet,snpMeta,genesym,formula,GGfitter-method	snpScreen
snpScreenResult-class	snpScreen
snpsNear	racExSet-class
Strains2rac	Strains2rac
thinHM2meta	HM2rac
thinHM2rac	HM2rac
topSnps	topSnps-methods
topSnps,cwSnpScreenResult-method	topSnps-methods
topSnps,gwSnpScreenResult-method	topSnps-methods
topSnps-methods	topSnps-methods
twSnpScreen	snpScreen
twSnpScreen,racExSet,snpMeta,formula,GGfitter-method	snpScreen
twSnpScreenResult-class	snpScreen
tx_rsnum	oGtypeExSet-class
updateObject,racExSet-method	racExSet-class
wrapSNPmetaWh	snpMeta-class
[,gwSnpScreenResult,ANY,ANY-method	gwSnpScreenResult-class
[,gwSnpScreenResult-method	gwSnpScreenResult-class
[,racExSet,ANY,ANY,ANY-method	racExSet-class
[,racExSet,ANY,ANY-method	racExSet-class
[,racExSet-method	racExSet-class
[,smlSet,ANY,ANY-method	smlSet-class
[,smlSet-method	smlSet-class
[,snpMeta,ANY,ANY,ANY-method	racExSet-class
[,snpMeta,ANY,ANY-method	snpMeta-class
[,snpMeta-method	snpMeta-class
