topSnps-methods {GGtools} | R Documentation

## report on the smallest p-values for SNP-expression associations

### Description

report on the smallest p-values for SNP-expression associations

### Methods

x = "cwSnpScreenResult"
  return a data frame with the smallest p-values. An optional argument `which = 'p.2df'` allows selection of 2-d.f. test results.
x = "gwSnpScreenResult"
  return a list of chromosome-specific data frames with the smallest p-values. An optional argument `which = 'p.2df'` allows selection of 2-d.f. test results.

### Examples

     data(hmceuB36.2021)
     g1 = gwSnpScreen(genesym("CPNE1"), hmceuB36.2021, chrnum(20))
     topSnps(g1)

[Package GGtools version 2.0.2 Index]