oGtypeExSet-class {GGBase} | R Documentation

## Class "oGtypeExSet" oligo-based genotyping output + expression set container – obsolete

### Description

Class "oGtypeExSet" oligo-based genotyping output + expression set container – obsolete

### Objects from the Class

Objects can be created by calls of the form `new("oGtypeExSet", assayData, phenoData, featureData, experimentData, annotation, exprs, ...)`.

### Slots

`snpCalls`:
  Object of class `"list"` ~~
`dbConns`:
  Object of class `"list"` ~~
`assayData`:
  Object of class `"AssayData"` ~~
`phenoData`:
  Object of class `"AnnotatedDataFrame"` ~~
`featureData`:
  Object of class `"AnnotatedDataFrame"` ~~
`experimentData`:
  Object of class `"MIAME"` ~~
`annotation`:
  Object of class `"character"` ~~
`.__classVersion__`:
  Object of class `"Versions"` ~~

### Extends

Class `"ExpressionSet"`, directly, with explicit coerce. Class `"eSet"`, by class "ExpressionSet", distance 2, with explicit coerce. Class `"VersionedBiobase"`, by class "ExpressionSet", distance 3, with explicit coerce. Class `"Versioned"`, by class "ExpressionSet", distance 4, with explicit coerce.

### Methods

No methods defined with class "oGtypeExSet" in the signature.

### Note

This class was designed to combine oligo SNP chip outputs with expression data. This specific workflow is not supported at this time. Convert the oligo outputs to snp.matrix and use smlSet container instead.

### Examples

    showClass("oGtypeExSet")

[Package GGBase version 2.0.4 Index]