oGtypeExSet-class           package:GGBase           R Documentation

_C_l_a_s_s "_o_G_t_y_p_e_E_x_S_e_t" _o_l_i_g_o-_b_a_s_e_d _g_e_n_o_t_y_p_i_n_g _o_u_t_p_u_t + _e_x_p_r_e_s_s_i_o_n
_s_e_t _c_o_n_t_a_i_n_e_r - _o_b_s_o_l_e_t_e

_D_e_s_c_r_i_p_t_i_o_n:

     Class "oGtypeExSet" oligo-based genotyping output + expression set
     container - obsolete

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("oGtypeExSet",
     assayData, phenoData, featureData, experimentData, annotation,
     exprs, ...)'.

_S_l_o_t_s:


     '_s_n_p_C_a_l_l_s': Object of class '"list"' ~~ 

     '_d_b_C_o_n_n_s': Object of class '"list"' ~~ 

     '_a_s_s_a_y_D_a_t_a': Object of class '"AssayData"' ~~ 

     '_p_h_e_n_o_D_a_t_a': Object of class '"AnnotatedDataFrame"' ~~ 

     '_f_e_a_t_u_r_e_D_a_t_a': Object of class '"AnnotatedDataFrame"' ~~ 

     '_e_x_p_e_r_i_m_e_n_t_D_a_t_a': Object of class '"MIAME"' ~~ 

     '_a_n_n_o_t_a_t_i_o_n': Object of class '"character"' ~~ 

     '.___c_l_a_s_s_V_e_r_s_i_o_n__': Object of class '"Versions"' ~~ 

_E_x_t_e_n_d_s:

     Class '"ExpressionSet"', directly, with explicit coerce. Class
     '"eSet"', by class "ExpressionSet", distance 2, with explicit
     coerce. Class '"VersionedBiobase"', by class "ExpressionSet",
     distance 3, with explicit coerce. Class '"Versioned"', by class
     "ExpressionSet", distance 4, with explicit coerce.

_M_e_t_h_o_d_s:

     No methods defined with class "oGtypeExSet" in the signature.

_N_o_t_e:

     This class was designed to combine oligo SNP chip outputs with
     expression data.  This specific workflow is not supported at this
     time.  Convert the oligo outputs to snp.matrix and use smlSet
     container instead.

_E_x_a_m_p_l_e_s:

     showClass("oGtypeExSet")

