snpScreenResult-class         package:GGBase         R Documentation

_C_l_a_s_s "_s_n_p_S_c_r_e_e_n_R_e_s_u_l_t" - _c_o_n_t_a_i_n_e_r
_a_p_p_r_o_a_c_h_i_n_g _o_b_s_o_l_e_s_c_e_n_c_e, _r_e_t_a_i_n_e_d _f_o_r _l_e_g_a_c_y _p_u_r_p_o_s_e_s,
_t_h_a_t _h_o_l_d_s _e_x_p_r_e_s_s_i_o_n _v_s _g_e_n_o_t_y_p_e _a_n_a_l_y_s_i_s _r_e_s_u_l_t_s; _s_e_e
_g_w_S_n_p_S_c_r_e_e_n_R_e_s_u_l_t _f_o_r _m_o_r_e _c_u_r_r_e_n_t _a_p_p_r_o_a_c_h.

_D_e_s_c_r_i_p_t_i_o_n:

     Class "snpScreenResult" - container approaching obsolescence,
     retained for legacy purposes, that holds expression vs genotype
     analysis results; see gwSnpScreenResult for more current approach.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form
     'new("snpScreenResult", ...)'.

_S_l_o_t_s:


     '._D_a_t_a': Object of class '"list"' list of inference tables 

     '_c_a_l_l': Object of class '"call"' audit information 

     '_g_e_n_e': Object of class '"character"' gene name 

     '_l_o_c_s': Object of class '"numeric"' locations of SNPs 

     '_c_h_r': Object of class '"character"' chromosome in play 

     '_f_i_t_t_e_r': Object of class '"ANY"' audit information 

     '_a_n_n_o_t_a_t_i_o_n': Object of class '"character"'  propagated from
          expression data 

_E_x_t_e_n_d_s:

     Class '"list"', from data part. Class '"vector"', by class "list",
     distance 2. Class '"AssayData"', by class "list", distance 2.

_M_e_t_h_o_d_s:

     No methods defined with class "snpScreenResult" in the signature
     in GGBase, but see GGtools.

_N_o_t_e:

     twSnpScreenResult is provided for multiple gene analyses.  See
     multiGwSnpScreenResult for the more current approach to such
     analyses

_A_u_t_h_o_r(_s):

     VJ Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     showClass("snpScreenResult")

