c.xcmsSet	c.xcmsSet
cdfpaths	xcmsSet-class
cdfpaths,xcmsSet-method	xcmsSet-class
cdfpaths<-	xcmsSet-class
cdfpaths<-,xcmsSet-method	xcmsSet-class
colMax	colMax
descendMin	descendZero
descendValue	descendZero
descendZero	descendZero
diffreport	diffreport-methods
diffreport,xcmsSet-method	diffreport-methods
doubleMatrix	doubleMatrix
etg	etg
fillPeaks	fillPeaks-methods
fillPeaks,xcmsSet-method	fillPeaks-methods
filtfft	filtfft
findEqualGreater	findEqualGreater
findEqualGreaterM	findEqualGreater
findEqualLess	findEqualGreater
findMZBoxes	findMZBoxes-methods
findMZBoxes,xcmsRaw-method	findMZBoxes-methods
findPeaks	findPeaks-methods
findPeaks,xcmsRaw-method	findPeaks-methods
findPeaks-methods	findPeaks-methods
findPeaks.centWave	findPeaks.centWave-methods
findPeaks.centWave,xcmsRaw-method	findPeaks.centWave-methods
findPeaks.matchedFilter	findPeaks.matchedFilter-methods
findPeaks.matchedFilter,xcmsRaw-method	findPeaks.matchedFilter-methods
findPeaks.MSW	findPeaks.MSW-methods
findPeaks.MSW,xcmsRaw-method	findPeaks.MSW-methods
findRange	findEqualGreater
getEIC	getEIC-methods
getEIC,xcmsRaw-method	getEIC-methods
getEIC,xcmsSet-method	getEIC-methods
getPeaks	getPeaks-methods
getPeaks,xcmsRaw-method	getPeaks-methods
getScan	getScan-methods
getScan,xcmsRaw-method	getScan-methods
getSpec	getSpec-methods
getSpec,xcmsRaw-method	getSpec-methods
group	group-methods
group,xcmsSet-method	group-methods
groupidx	xcmsSet-class
groupidx,xcmsSet-method	xcmsSet-class
groupidx<-	xcmsSet-class
groupidx<-,xcmsSet-method	xcmsSet-class
groupnames	groupnames-methods
groupnames,xcmsEIC-method	groupnames-methods
groupnames,xcmsSet-method	groupnames-methods
groups	xcmsSet-class
groups,xcmsSet-method	xcmsSet-class
groups<-	xcmsSet-class
groups<-,xcmsSet-method	xcmsSet-class
groupval	groupval-methods
groupval,xcmsSet-method	groupval-methods
image.xcmsRaw	image.xcmsRaw
integerMatrix	doubleMatrix
logicalMatrix	doubleMatrix
medianFilter	medianFilter
mzrange	xcmsEIC-class
mzrange,xcmsEIC-method	xcmsEIC-class
na.flatfill	na.flatfill
netCDFClose	netCDF
netCDFIsFile	netCDF
netCDFMSPoints	netCDF
netCDFOpen	netCDF
netCDFRawData	netCDF
netCDFStrError	netCDF
netCDFVarDouble	netCDF
netCDFVarID	netCDF
netCDFVarInt	netCDF
netCDFVarLen	netCDF
panel.cor	panel.cor
peaks	xcmsSet-class
peaks,xcmsSet-method	xcmsSet-class
peaks<-	xcmsSet-class
peaks<-,xcmsSet-method	xcmsSet-class
plot.xcmsEIC	plot.xcmsEIC
plotChrom	plotChrom-methods
plotChrom,xcmsRaw-method	plotChrom-methods
plotPeaks	plotPeaks-methods
plotPeaks,xcmsRaw-method	plotPeaks-methods
plotRaw	plotRaw-methods
plotRaw,xcmsRaw-method	plotRaw-methods
plotrt	plotrt-methods
plotrt,xcmsSet-method	plotrt-methods
plotScan	plotScan-methods
plotScan,xcmsRaw-method	plotScan-methods
plotSpec	plotSpec-methods
plotSpec,xcmsRaw-method	plotSpec-methods
plotSurf	plotSurf-methods
plotSurf,xcmsRaw-method	plotSurf-methods
plotTIC	plotTIC-methods
plotTIC,xcmsRaw-method	plotTIC-methods
profBin	profGenerate
profBinLin	profGenerate
profBinLinBase	profGenerate
profBinLinBaseM	profGenerate
profBinLinM	profGenerate
profBinM	profGenerate
profinfo	xcmsSet-class
profinfo,xcmsSet-method	xcmsSet-class
profinfo<-	xcmsSet-class
profinfo<-,xcmsSet-method	xcmsSet-class
profIntLin	profGenerate
profIntLinM	profGenerate
profMaxIdx	profGenerate
profMaxIdxM	profGenerate
profMedFilt	profMedFilt-methods
profMedFilt,xcmsRaw-method	profMedFilt-methods
profMethod	profMethod-methods
profMethod,xcmsRaw-method	profMethod-methods
profMethod<-	profMethod-methods
profMethod<-,xcmsRaw-method	profMethod-methods
profMz	xcmsRaw-class
profMz,xcmsRaw-method	xcmsRaw-class
profRange	profRange-methods
profRange,xcmsRaw-method	profRange-methods
profStep	profStep-methods
profStep,xcmsRaw-method	profStep-methods
profStep<-	profStep-methods
profStep<-,xcmsRaw-method	profStep-methods
pval	pval
rampClose	ramp
rampCloseAll	ramp
rampInit	ramp
rampIsFile	ramp
rampNumScans	ramp
rampOpen	ramp
rampPrintFiles	ramp
rampRawData	ramp
rampScanHeaders	ramp
rampSIPeaks	ramp
rawEIC	rawEIC-methods
rawEIC,xcmsRaw-method	rawEIC-methods
rectUnique	rectUnique
retcor	retcor-methods
retcor,xcmsSet-method	retcor-methods
retexp	retexp
revMz	xcmsRaw-class
revMz,xcmsRaw-method	xcmsRaw-class
rowMax	colMax
rtrange	xcmsEIC-class
rtrange,xcmsEIC-method	xcmsEIC-class
sampclass	xcmsSet-class
sampclass,xcmsSet-method	xcmsSet-class
sampclass<-	xcmsSet-class
sampclass<-,xcmsSet-method	xcmsSet-class
sampnames	sampnames-methods
sampnames,xcmsEIC-method	sampnames-methods
sampnames,xcmsSet-method	sampnames-methods
sampnames<-	xcmsSet-class
sampnames<-,xcmsSet-method	xcmsSet-class
show,xcmsEIC-method	xcmsEIC-class
show,xcmsRaw-method	xcmsRaw-class
show,xcmsSet-method	xcmsSet-class
sortMz	xcmsRaw-class
sortMz,xcmsRaw-method	xcmsRaw-class
specNoise	specNoise
specPeaks	specPeaks
split.xcmsSet	split.xcmsSet
SSgauss	SSgauss
which.colMax	colMax
which.rowMax	colMax
xcmsEIC-class	xcmsEIC-class
xcmsRaw	xcmsRaw
xcmsRaw-class	xcmsRaw-class
xcmsSet	xcmsSet
xcmsSet-class	xcmsSet-class
