SpeciesReference-class {rsbml} | R Documentation

## SBML type "SpeciesReference"

### Description

Binds a reactant or product `Species` to a `Reaction`.

### Instantiation

Objects can be created by calls of the form `new("SpeciesReference", ...)`.

### Slots

`stoichiometry`:
  Object of class `"numeric"` indicating the (static) stoichiometric coefficient.
`stoichiometryMath`:
  Object of class `"StoichiometryMath"` that dynamically calculates the stoichiometric coefficient.
`id`:
  Object of class `"character"` uniquely identifying this component.
`species`:
  Object of class `"character"` identifying the `Species` being referenced.
`metaId`:
  Object of class `"character"` that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the `annotation` element.
`notes`:
  Object of class `"character"` containing user-readable XHTML notes about an element.
`annotation`:
  Object of class `"character"` containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.

### Extends

Class `"SimpleSpeciesReference"`, directly. Class `"SBase"`, by class "SimpleSpeciesReference", distance 2.

### Methods

stoichiometry
  `signature(object = "SpeciesReference")`: gets the `stoichiometry` slot
stoichiometry<-
  `signature(object = "SpeciesReference")`: sets the `stoichiometry` slot
stoichiometryMath
  `signature(object = "SpeciesReference")`: gets the `stoichiometryMath` slot
stoichiometryMath<-
  `signature(object = "SpeciesReference")`: sets the `stoichiometryMath` slot

### Author(s)

Michael Lawrence

### References

http://sbml.org/documents/

[Package rsbml version 1.4.0 Index]