BFSlevel	BFSlevel
BoutrosRNAi2002	BoutrosRNAi2002
BoutrosRNAiDiscrete	BoutrosRNAi2002
BoutrosRNAiExpression	BoutrosRNAi2002
bum.dalt	internal
bum.EM	internal
bum.histogram	internal
bum.mle	internal
bum.negLogLik	internal
bum.palt	internal
bum.qalt	internal
bum.ralt	internal
connectModules	internal
CONTmLL	CONTmLL
dbum	internal
enumerate.models	enumerate.models
filterEGenes	selectEGenes
fitBUM	internal
FULLmLL	FULLmLL
getComponent	internal
getDensityMatrix	getDensityMatrix
getRelevantEGenes	selectEGenes
internal	internal
inv.logit	internal
local.model.prior	local.model.prior
logit	internal
mLL	mLL
moduleNetwork	moduleNetwork
moduleNetwork.aux	internal
nem	nem
nem.cont.preprocess	nem.cont.preprocess
nem.discretize	nem.discretize
nem.greedy	nem.greedy
nemModelSelection	nemModelSelection
network.AIC	network.AIC
pairwise.posterior	pairwise.posterior
pbum	internal
PhiDistr	score
plot.effects	plot.effects
plot.ModuleNetwork	plot.nem
plot.nem	plot.nem
plot.nem.greedy	plot.nem
plot.pairwise	plot.nem
plot.score	plot.nem
plot.triples	plot.nem
print.ModuleNetwork	moduleNetwork
print.nem.greedy	nem.greedy
print.pairwise	pairwise.posterior
print.score	score
print.triples	triples.posterior
prune.graph	prune.graph
qbum	internal
qqbum	internal
rbum	internal
SCCgraph	SCCgraph
score	score
selectEGenes	selectEGenes
subsets	subsets
transitive.closure	transitive.closure
transitive.reduction	transitive.reduction
triples.posterior	triples.posterior
