plotBeadIntensities {beadarray} | R Documentation

## Plot bead intensities

### Description

Function to plot the intensities of all beads of a particular type on an array.

### Usage

    plotBeadIntensities(BLData, ProbeIDs, arrays, log = FALSE,
              whatToPlot="G", ProbeCols=NULL, ylim=NULL,...)

### Arguments

`BLData` | a BeadLevelList object
`ProbeIDs` | numeric value giving the ProbeID(s) for the bead type(s) we are interested in
`arrays` | numeric value giving the array we are interested in
`log` | if TRUE log2 intensities are plotted (and used to find outliers)
`whatToPlot` | character string specifying which intensities to plot. Possibilities are `"G"`, `"Gb"` for single channel data and `"G"`, `"Gb"`, `"R"` and `"Rb"` for two-colour data
`ProbeCols` | vector of colour names to assign to each bead type
`ylim` | vector providing the upper and lower bounds for the y-axis in the plotting window
`...` | further graphical parameters to `plot`

### Details

Boxplots of the G, Gb, R or Rb intensities on the original or log-scale for each bead type specified by `ProbeIDs` on selected `arrays` is produced.

### Value

Plot is produced on current graphical device

### Author(s)

Mark Dunning

### Examples

    data(BLData)

    plotBeadIntensities(BLData, arrays=seq(1:4), ProbeIDs=c(2,1000), log=TRUE)

[Package beadarray version 1.6.0 Index]