intactComplex-class         package:Rintact         R Documentation

_C_l_a_s_s "_i_n_t_a_c_t_C_o_m_p_l_e_x"

_D_e_s_c_r_i_p_t_i_o_n:

     A class representing complex data.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are usually created by 'psi25complex'.

_S_l_o_t_s:

     '_i_n_t_a_c_t_I_d': character, identifier of the complex in IntAct.

     '_s_h_o_r_t_L_a_b_e_l': character, short label of the complex.

     '_f_u_l_l_N_a_m_e': character, full name of the complex.

     '_o_r_g_a_n_i_s_m_N_a_m_e': character, the unique organism names of the
          interactors in this complex.

     '_t_a_x_I_d': character, the unique NCBI taxonomy ID(s) of the
          interactors in this complex.

     '_i_n_t_e_r_a_c_t_o_r_s': data.frame. The data.frame contains two columns.
          The first column is the UniProt ID(s) of the interactors, the
          second column is the interactor's multiplicity.

     '_a_t_t_r_i_b_u_t_e_s': named character. The name is the attribute name, 
          the value is the attribute value. Attribute names include: 
          'curated-complex', 'complex-synonym', 'kd', 
          'complex-properties', 'disease'.

_M_e_t_h_o_d_s:

     _s_h_o_w 'signature(object = "intactComplex")': a print method

_A_u_t_h_o_r(_s):

     Nianhua Li

_S_e_e _A_l_s_o:

     'psi25complex'

