# Calculates a global test for differential gene expression between groups

## Documentation for package ‘GlobalAncova’ version 3.4.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

colon.normal | Gene expression data
colon.pheno | Covariate information for the colon data
colon.tumour | Gene expression data
GAGO | Multiple testing on the GO graph
getFocus | Multiple testing on the GO graph
GlobalAncova | Global test for differential gene expression
GlobalAncova,matrix,formula,formula,ANY,missing,missing,missing-method | Methods for Function GlobalAncova
GlobalAncova,matrix,formula,missing,ANY,missing,missing,character-method | Methods for Function GlobalAncova
GlobalAncova,matrix,missing,missing,missing,ANY,ANY,missing-method | Methods for Function GlobalAncova
GlobalAncova-methods | Methods for Function GlobalAncova
GlobalAncova.closed | Closed testing procedure for testing several groups of genes using GlobalAncova
GlobalAncova.closed,matrix,list,formula,formula,ANY,missing,missing,missing-method | Methods for Function GlobalAncova.closed
GlobalAncova.closed,matrix,list,formula,missing,ANY,missing,missing,character-method | Methods for Function GlobalAncova.closed
GlobalAncova.closed,matrix,list,missing,missing,missing,ANY,ANY,missing-method | Methods for Function GlobalAncova.closed
GlobalAncova.closed-methods | Methods for Function GlobalAncova.closed
GlobalAncova.decomp | GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates
makeGOstructure | Multiple testing on the GO graph
pair.compare | Pairwise comparisons of factor levels within GlobalAncova
pathways | Cancer related pathways
phenodata | Covariate information for the van t'Veer data
Plot.all | Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic
Plot.genes | Genes Plot for Global Ancova
Plot.genes,matrix,formula,formula,ANY,missing,missing,missing-method | Methods for Function Plot.genes
Plot.genes,matrix,formula,missing,ANY,missing,missing,character-method | Methods for Function Plot.genes
Plot.genes,matrix,missing,missing,missing,ANY,ANY,missing-method | Methods for Function Plot.genes
Plot.genes-methods | Methods for Function Plot.genes
Plot.sequential | Visualization of sequential decomposition
Plot.subjects | Subjects Plot for GlobalAncova
Plot.subjects,matrix,formula,formula,ANY,missing,missing,missing-method | Methods for Function Plot.subjects
Plot.subjects,matrix,formula,missing,ANY,missing,missing,character-method | Methods for Function Plot.subjects
Plot.subjects,matrix,missing,missing,missing,ANY,ANY,missing-method | Methods for Function Plot.subjects
Plot.subjects-methods | Methods for Function Plot.subjects
vantVeer | Gene expression data