make_racExSet {GGtools} | R Documentation

## create a racExSet from simpler constituents

### Description

create a racExSet from simpler constituents

### Usage

    make_racExSet(exprs, racs, rarebase, SNPalleles, pd, mi, anno)

### Arguments

`exprs` | matrix of processed expression values, GxN, rownames are reporterNames
`racs` | matrix of rare allele counts, SxN, rownames are snp ids (rs numbers)
`rarebase` | character S-vector of rare base
`SNPalleles` | character S-vector of strings of form "A/B" indicating biallelic polymorphism options
`pd` | old phenoData instance
`mi` | MIAME instance
`anno` | string for annotation referencing

### Author(s)

Vince Carey <stvjc@channing.harvard.edu>

### Examples

    data(litsn)
    data(litex)
    data(pdd)
    data(rb20M)
    data(Sa20M)
    dem = make_racExSet( exprs=litex, racs=t(litsn), pd=pdd, mi=new("MIAME"),
      rarebase=rb20M, SNPalleles=Sa20M, anno="hgfocus")
    dem

[Package GGtools version 1.6.1 Index]