snpMeta-class {GGtools} | R Documentation

## Class "snpMeta" – HapMap (or Wellcome INBREDS) -based metadata structures for SNPs

### Description

HapMap (or Wellcome INBREDS) -based metadata structures for SNPs

### Objects from the Class

Objects can be created by calls of the form `new("snpMeta", ...)`.

### Slots

`meta`:
  Object of class `"environment"` holds the table in the `meta` element, in the form of a `data.frame`, with rownames giving the SNP ids, and columns `pos`, `strand`
`chromosome`:
  Object of class `"character"` string identifying chromosome on which SNPs are documented

### Methods

[
  `signature(x = "snpMeta")`: ...
chromosome
  `signature(x = "snpMeta")`: ...
coerce
  `signature(from = "snpMeta", to = "data.frame")`: ...
dim
  `signature(x = "snpMeta")`: ...
nrow
  `signature(x = "snpMeta")`: ...
show
  `signature(object = "snpMeta")`: ...

### Author(s)

VJ Carey <stvjc@channing.harvard.edu>

### References

www.hapmap.org , www.well.ox.ac.uk/mouse/INBREDS

### Examples

    data(chr20meta)
    chr20meta["rs6060535",]

[Package GGtools version 1.6.1 Index]