HMworkflow {GGtools} | R Documentation

## function to bind together HapMap genotyping results and expression data

### Description

function to bind together genotyping results and expression data

### Usage

    HMworkflow(gzfn, emat, pd, mi, anno)

### Arguments

`gzfn` | path to gzipped genotyping results
`emat` | matrix of conforming expression results (colnames match some of those in gzfn)
`pd` | `phenoData` instance
`mi` | `MIAME` instance
`anno` | string indicating platform, such as `"hgfocus"`

### Details

builds a `racExSet-class` instance

### Value

builds a `racExSet-class` instance

### Author(s)

Vince Carey <stvjc@channing.harvard.edu>

### Examples

    data(chr20GGdem)
    fi = system.file("fileDemos/geno20demo.txt.gz", package="GGtools")
    HMworkflow(fi, exprs(chr20GGdem)[1:100,],
      phenoData(chr20GGdem), experimentData(chr20GGdem),
      "hgfocus")

[Package GGtools version 1.6.1 Index]