ddCtSet-class {prada} | R Documentation

## Class for storage of relative rtPCR results

### Description

A subclass extending virtual class `eSet` designed to store the raw data and results from a ddCt analysis of rtPCR data.

### Creating Objects

see `eSet` for details `new("ddCtSet",`
`phenoData = ...., # object of class \code{AnnotatedDataFrame}`
`experimentData = .... # object of class \code{MIAME}`
`annotation = .... # object of class character`
`assayData = .... # object of class assayData`
`)`
The `assayData` slot can be instantiated using function `assayDataNew`.

### Slots

Inherited from `eSet`:

`assayData`:
  Contains matrices with equal dimensions, and with column number equal to `nrow(phenoData)`. `assayData` must contain matrices `dCt`,`dCt.error`,`Ct.error`, `ddCt`,`ddCt.error`,`Difference`,`level.err`, `number`,`numberNA`,`Plate`. See`ddCt` for details. Class:`AssayData`
`phenoData`:
  See `eSet`
`experimentData`:
  See `eSet`
`annotation`:
  See `eSet`

### Methods

exprs, exprs<-
  get or set expression data
initialize
  constructor, not to be called by the user

### Author(s)

Florian Hahne

[Package prada version 1.10.1 Index]