$.cytoFrame	cytoFrame-class
analysePlate	analysePlate
appendGates	gateSet-class
appendGates, gateSet_method	gateSet-class
appendGates,cytoFrame-method	cytoFrame-class
appendGates,gateSet-method	gate-class
applyGate	gateSet-class
applyGate,cytoFrame,character-method	cytoFrame-class
applyGate,cytoFrame,gate-method	cytoFrame-class
applyGate,cytoFrame,gateSet-method	cytoFrame-class
applyGate,cytoFrame,logical-method	cytoFrame-class
applyGate,cytoFrame,numeric-method	cytoFrame-class
applyGate,matrix,gate-method	gate-class
applyGate,matrix,gateSet-method	gateSet-class
as.all	as.all
as.gateSet	gate-class
as.gateSet,gate-method	gate-class
barploterrbar	barploterrbar
cframe	data-cytoFrame
colnames,cytoFrame-method	cytoFrame-class
colnames,cytoSet-method	cytoSet-class
colnames<-,cytoFrame-method	cytoFrame-class
colnames<-,cytoSet-method	cytoSet-class
combineFrames	combineFrames
combineGates	gate-class
csApply	csApply
cset	data-cytoSet
cytoFrame	cytoFrame-class
cytoFrame-class	cytoFrame-class
cytoSet	cytoSet-class
cytoSet-class	cytoSet-class
ddCt	ddCt
ddCtSet-class	ddCtSet-class
description,cytoFrame-method	cytoFrame-class
description<-,cytoFrame,character-method	cytoFrame-class
devDims	devDims
devRes	devRes
drawGate	gate-class
drawGate,cytoFrame-method	cytoFrame-class
drawGate,matrix-method	cytoFrame-class
eListWrite	eListWrite
exprs,cytoFrame-method	cytoFrame-class
exprs,ddCtSet-method	ddCtSet-class
exprs<-,cytoFrame,matrix-method	cytoFrame-class
exprs<-,ddCtSet,matrix-method	ddCtSet-class
fitNorm2	fitNorm2
gate	gate-class
gate,cytoFrame-method	cytoFrame-class
gate-class	gate-class
gate<-	gate-class
gate<-,cytoFrame,gate-method	cytoFrame-class
gate<-,cytoFrame,gateSet-method	cytoFrame-class
gatePoints	new-internal
gateSet	gateSet-class
gateSet-class	gateSet-class
getPradaPar	getPradaPar
hist,cytoFrame-method	cytoFrame-class
hist,cytoSet-method	cytoSet-class
initialize,ddCtSet-method	ddCtSet-class
killProgress	tcltkProgress
length,cytoSet-method	cytoSet-class
length,gateSet-method	gateSet-class
lines,gate-method	gate-class
names,gate-method	gate-class
names,gateSet-method	gateSet-class
names<-,gate-method	gate-class
names<-,gateSet-method	gateSet-class
ncol,cytoFrame-method	cytoFrame-class
nrow,cytoFrame-method	cytoFrame-class
pData,cytoSet-method	cytoSet-class
phenoData,cytoSet-method	cytoSet-class
phenoData<-,cytoSet,phenoData-method	cytoSet-class
plot,cytoFrame,missing-method	cytoFrame-class
plot,cytoSet,missing-method	cytoSet-class
plotNorm2	plotNorm2
plotPlate	plotPlate
progress	tcltkProgress
read.fcs	readFCS
readCytoSet	readCytoSet
readFCS	readFCS
readFCSdata	readFCSaux
readFCSgetPar	readFCSaux
readFCSheader	readFCSaux
readFCStext	readFCSaux
readSDM	readSDM
removeCensored	removeCensored
removeCensored,cytoFrame-method	removeCensored
removeCensored,data.frame-method	removeCensored
removeCensored,matrix-method	removeCensored
setPradaPars	getPradaPar
show,cytoFrame-method	cytoFrame-class
show,cytoSet-method	cytoSet-class
show,gate-method	gate-class
show,gateSet-method	gateSet-class
threePanelPlot	threePanelPlot
thresholds	thresholds
touchFCS	touchFCS
updateProgress	tcltkProgress
vpLocation	vpLocation
[,cytoFrame-method	cytoFrame-class
[,cytoSet-method	cytoSet-class
[,gateSet-method	gateSet-class
[[,cytoSet-method	cytoSet-class
[[,gateSet-method	gateSet-class
[[<-,cytoSet-method	cytoSet-class
