reporter {Biobase} | R Documentation

## Example Data Frame Object for the ReporterInfo Slot

### Description

The `reporter` object is a 500 by 1 data frame. The rows represent the 500 probe ids in the `geneData` data. The values in `reporter` are the predefined probe types for the probes. `reporter` is used to created the exprSet object `sample.exprSet`.

### Usage

    data(reporter)

### Format

A 500 by 1 data frame

### Details

There are 10 predefined probe types:

`AFFX-`
  Quality Control (QC)
`_f_`
  SequenceFamily
`_g_`
  CommonGroups
`_s_`
  SimilarityConstraint
`_r_`
  RulesDropped
`_i_`
  Incomplete
`_b_`
  AmbiguousProbeSet
`_l_`
  LongProbeSet
`_at`
  AntiSenseTarget
`_st`
  SenseTarget

### Source

Affymetrix GeneChip Expression Analysis Data Analysis Fundamentals (http://www.affymetrix.com/Auth/support/downloads/manuals/data_analysis_fundamentals_manual.pdf)

### References

~~ possibly secondary sources and usages ~~

### Examples

    data(reporter)
    ## maybe str(reporter) ; plot(reporter) ...

[Package Biobase version 1.12.2 Index]