collectIntactData {y2hStat} | R Documentation

## A function that parses the Intact repository for bait to prey affiliation

### Description

This function is the parsing function for the Intact downloaded data-sets.

### Usage

    collectIntactData(intactID)

### Arguments

`intactID` | A character vector of the Intact ID's that reference the particular experiment needed to be parsed.

### Details

The collectIntactData is a general function that reads a downloaded (and organized) xml file, and gathers information for the set of desired experiments.

### Value

`numBaits` | The number of distinct baits over all experiments
`numPreys` | The number of distinct preys over all experiments
`allBaits` | A character vector of all distince baits over all experiments
`allPreys` | A character vector of all distinct preys over all experiments
`intactID` | The intact ID's of all the experiments
`indexSetAll` | A list of lists. Each element of the top list corresponds to a particular experiment; the elements of these sub-lists are character vectors. The character vectors will always carry the bait protein in the first element and all of the preys that particular bait has found as the rest of the elements to the vector. Note that the multiplicity is not guarenteed to be unity.
`baitsSystematic` | A character vector with a number of baits mapped to their systematic names
`preysSystematic` | A character vector with a number of preys mapped to their systematic names
`shortL` | A character vector listing the first author of each experiment.
`tableList` | The organized xml file parsed by the function.

### Author(s)

T Chiang

### References

http://www.ebi.ac.uk/intact

### Examples

      inTactData <- collectIntactData(c("EBI-375746", "EBI-531419",
                                        "EBI-295760", "EBI-698096"))

[Package y2hStat version 1.2.0 Index]