recipBP {y2hStat} | R Documentation

## A function that returns all preys which were sampled as baits that also detected non-trivial preys.

### Description

This function takes all the detected preys from some y2h experiment and checkes to see which of these proteins were sampled as a bait that found another prey protein.

### Usage

    recipBP(y2h, homodimer = TRUE)

### Arguments

`y2h` | A three tiered list. Names of the second tier corresponds to ID of experiment. Names of the third tier should be the bait proteins. The entries of the third tier are character vectors of proteins detected as prey
`homodimer` | A logical. If TRUE, we record the reciporcity of homodimers. If false, reciprocity is only recorded if there the bait to prey associations extends beyond homodimers.

### Value

The return value is a named list. Each names corresponds to the experiment. The entries of the list is a character vector of those proteins which were both 1. detected as prey and 2. tested as a bait and found a non-trivial prey.

### Author(s)

T Chiang

### Examples

    data(y2hSysGW)
    eg=y2hSysGW[3]
    recip(eg)

[Package y2hStat version 1.2.0 Index]