# Analysis of cell-based screens

## Documentation for package `cellHTS' version 1.2.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

annotate | Annotates the gene IDs of a given cellHTS object
bdgpbiomart | Dataset with annotation of CG identifiers
configure | Configures the plates and plate result files
imageScreen | Experiment-wide quality control plot of a cellHTS object
lines.ROC | Creates an object of class "ROC" which can be plotted as a ROC curve
normalizePlateMedian | Median normalization of the data and data transformation
normalizeRatio | Normalization of two-color data and data transformation
oneRowPerId | Rearrange dataframe entries such that there is exactly one row per ID.
plot.ROC | Creates an object of class "ROC" which can be plotted as a ROC curve
print.cellHTS | Printing cellHTS objects
readPlateData | Read a collection of plate reader data files
ROC | Creates an object of class "ROC" which can be plotted as a ROC curve
summarizeReplicates | Summarizes between normalized replicate values given in a cellHTS object, obtaining a single z-score for each probe
writeReport | Create a directory with HTML pages of linked tables and plots documenting the contents of a cellHTS object