probeDiagnostics {beadarray} | R Documentation

## Diagnostics plot for a bead type

### Description

Function to produce 4 diagnostic plots on the same page for a particular bead type on an array

### Usage

    probeDiagnostics(BLData, probe, array, label = TRUE,
    log = FALSE, n = 3, showOutliers = TRUE, ...)

### Arguments

`BLData` | BeadLevelList object
`probe` | numeric value giving the ProbeID of the bead type we want to plot
`array` | numeric value of the array we want
`label` | if TRUE all beads will be assigned a numeric label
`log` | if TRUE outliers for this bead type will be calculated using log2 bead intensities
`n` | outliers for this bead type are beads with intensities more than 'n' standard deviations from the mean
`showOutliers` | boolean specifying whether the outliers should be shown on the plots
`...` | further graphical parameters to `plot`

### Details

Combines the results of 4 seperate plotting functions onto the same page

### Value

Plot is produced on the current graphical device.

### Author(s)

Mark Dunning

### Examples

    data(BLData)

    probeDiagnostics(BLData, 2, 1)

    probeDiagnostics(BLData, 2, 1, log=TRUE)

    probeDiagnostics(BLData, 2, 1, log=TRUE, label=FALSE)

[Package beadarray version 1.0.0 Index]