# Estimation of local false discovery rate

## Documentation for package `twilight' version 1.4.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

exfdr | Example of twilight result
expval | Example of twilight.pval result
plot.twilight | A plot function for twilight objects
print.twilight | A print function for twilight objects
twilight | Estimation of local false discovery rate
twilight.combi | All permutations of a binary vector
twilight.filtering | A function for permutation filtering
twilight.permute.pair | A permutation matrix of paired class labels
twilight.permute.unpair | A permutation matrix of unpaired class labels
twilight.pval | A function to compute p-values from expression sets