combine.libs	extract.lib
compare.lib.pair	sage.library.comparison
compute.sequence.neighbors	error.correction
compute.unique.tags	extract.lib
create.matrix.csr	sage.utilities
difference.scatter.plot	sage.utilities
em.estimate.error.given	error.correction
estimate.errors.mean	error.correction
extract.ditags	extract.lib
extract.lib.from.directory	extract.lib
extract.lib.from.zip	extract.lib
extract.library.tags	extract.lib
plot.sage.library	sage.library
plot.sage.library.comparison	sage.library.comparison
print.sage.library	sage.library
print.sage.library.comparison	sage.library.comparison
read.phd.file	extract.lib
read.sage.library	sage.library
read.sage.library.comparison	sage.library.comparison
read.seq.qual.filepair	extract.lib
reestimate.lib.from.tagcounts	extract.lib
remove.sage.artifacts	extract.lib
revcomp	sage.utilities
sage.test	sage.test
SAGEartifacts	extract.lib
simulate.library	simulate.library
summary.sage.library	sage.library
summary.sage.library.comparison	sage.library.comparison
table.sparse	sage.utilities
tagmatrix2tagnum	sage.utilities
tagnum2tagmatrix	sage.utilities
tagnum2tagsequence	sage.utilities
tagsequence2tagnum	sage.utilities
write.sage.library	sage.library
write.sage.library.comparison	sage.library.comparison
