clusterStatisticHyper-class {goCluster} | R Documentation

## Class "clusterStatisticHyper" provides the hypergeometric distribution for the goCluster analysis.

### Description

This class provides the hypergeometric distribution for goCluster and can be used to identify gene groups that show a significant enrichement of similar annotation terms.

### Details

The class provides a wrapper around the `evalClusterHyper` function. Please read the corresponding documentation for further details.

### Slots

All slots are described in the documentation of the `clusterStatistic-class` and `clusterModule-class`.

### Extends

Class `"clusterStatistic"`, directly. Class `"clusterModule"`, by class `"clusterStatistic"`.

### Methods

config
  `signature(object = "clusterStatisticHyper")`: interactive setup of the class. There are no options that you can set on this class.
setup
  `signature(object = "clusterStatisticHyper")`: returns the configuration of the object as a list. Since there are no options to this class, this is always an empty list.
setup<-
  `signature(object = "clusterStatisticHyper")`: non-interactive setup of the class. Not necessary since this class has no options.
execute
  `signature(object = "clusterStatisticHyper")`: runs the statistical analysis on the clustering results provided by the parent class.
reset
  `signature(object = "clusterStatisticHyper")`: resets the results of this class so that the analysis can be run again.
print
  `signature(object = "clusterStatisticHyper")`: This function prints some basic information about the content of this object. If the object has been executed, it will show the number clusters that have been analyzed.

### Author(s)

Gunnar Wrobel, work@gunnarwrobel.de, http://www.gunnarwrobel.de.

### See Also

`evalClusterHyper`, `goCluster-class`, `clusterModule-class`, `clusterStatistic-class`

[Package goCluster version 1.4.0 Index]