DEDS-class {DEDS} | R Documentation

## DEDS Result List - class

### Description

A simple list-based class to store DEDS results.`DEDS` objects are usually created by functions `deds.pval`, `deds.stat` and `deds.stat.linkC`.

### Slots/List Components

`DEDS` objects can be created by `new("DEDS",deds)` where `deds` is a list. This class contains no slots, but objects should contain the following list components:

`E`: | A numeric vector of the most extreme point in the direction of differential expression.
`p`: | A numeric vector of q- or adjusted p-values.
`geneOrder`: | An integer vector giving the index of the top genes in terms of differential expression.
`stats`: | A matrix of p values or statistics.
`options`: | A character vector of options used in the test.

### Methods

This class inherits directly from class `list`, so any operation appropriate for lists will work on objects of this class. In addition, Other functions which operate on `DEDS` objects include `pairs` and `hist`.

### Author(s)

Yuanyuan Xiao, yxiao@itsa.ucsf.edu,
Jean Yee Hwa Yang, jean@biostat.ucsf.edu.

### See Also

`deds.pval`, `deds.stat`, `deds.stat.linkC`

[Package DEDS version 1.2.2 Index]