buildTrainingSet	internal
buildTrainingSet.signaltrans	internal
classificationModel	classificationModel
classificationModelSignalTrans	classificationModelSignalTrans
code_test	internal
code_train	internal
color.pathway.by.elements	getComponents
Entrez2ORF	ORF2Entrez
Entrez2ORF.internal	internal
gene2pathway	gene2pathway
gene2pathway.signaltrans	gene2pathway.signaltrans
get.element.relations.by.pathway	internal
get.elements.by.pathway	getComponents
getComponents	getComponents
getComponents.internal	internal
getInterProDomains	internal
getKEGGHierarchy	internal
internal	internal
KEGG2Entrez	internal
loss	internal
modelKEGG	classificationModel
modelSignalTrans	classificationModelSignalTrans
ORF2Entrez	ORF2Entrez
predict.gene2pathway	internal
retrain	retrain
retrain.signaltrans	retrain.signaltrans
struct_predict	internal
struct_train	internal
svmlearn	internal
svmpredict	internal
test.overrepresentation	test.overrepresentation
