# Fingerprinting for Flow Cytometry

## Documentation for package ‘flowFP’ version 1.2.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

flowFP-package | Package overview
append,flowFPPlex,flowFP-method | Methods to append flowFP fingerprints to a flowFPPlex
append,flowFPPlex,flowFPPlex-method | Methods to append flowFP fingerprints to a flowFPPlex
append,flowFPPlex,list-method | Methods to append flowFP fingerprints to a flowFPPlex
append-methods | Methods to append flowFP fingerprints to a flowFPPlex
binBoundary | Return bin boundaries for a flowFPModel
binBoundary,flowFP-method | Return bin boundaries for a flowFPModel
binBoundary,flowFPModel-method | Return bin boundaries for a flowFPModel
binBoundary-methods | Return bin boundaries for a flowFPModel
counts | Method for getting fingerprint data.
counts,flowFP-method | Method for getting fingerprint data.
counts,flowFPPlex-method | Method for getting fingerprint data.
flowFP | Fingerprint constructor
flowFP-class | Fingerprint class description.
flowFPModel | Fingerprint model constructor
flowFPModel-class | Fingerprint model class description.
flowFPPlex | Fingerprint collection constructor.
flowFPPlex-class | Fingerprint collection class description.
fs1 | Example FCS flowSet
fs2 | Example FCS flowSet
hasClasses | Returns TRUE if the flowFP has a class factor for its instances
hasClasses,flowFP-method | Returns TRUE if the flowFP has a class factor for its instances
hasClasses,flowFPPlex-method | Returns TRUE if the flowFP has a class factor for its instances
hasClasses-methods | Returns TRUE if the flowFP has a class factor for its instances
is.flowFP | Test to see if object is a flowFP
is.flowFPModel | Test to see if object is a flowFPModel
is.flowFPPlex | Test to see if object is a flowFPPlex
length,flowFPPlex-method | The number of fingerprints in a flowFPPlex
length-methods | The number of fingerprints in a flowFPPlex
length<-,flowFPPlex,numeric-method | The number of fingerprints in a flowFPPlex
name | Get Model Name
name,flowFP-method | Get Model Name
name,flowFPModel-method | Get Model Name
name,flowFPPlex-method | Get Model Name
name-methods | Get Model Name
nFeatures | Returns the number of features in an object.
nFeatures,flowFP-method | Returns the number of features in an object.
nFeatures,flowFPModel-method | Returns the number of features in an object.
nFeatures,flowFPPlex-method | Returns the number of features in an object.
nFeatures-methods | Returns the number of features in an object.
nInstances | Returns the number of instances in an object.
nInstances,flowFP-method | Returns the number of instances in an object.
nInstances,flowFPPlex-method | Returns the number of instances in an object.
nInstances-methods | Returns the number of instances in an object.
nRecursions | Methods to set or get nRecursions
nRecursions,flowFP-method | Methods to set or get nRecursions
nRecursions,flowFPModel-method | Methods to set or get nRecursions
nRecursions,flowFPPlex-method | Methods to set or get nRecursions
nRecursions-methods | Methods to set or get nRecursions
nRecursions<- | Methods to set or get nRecursions
nRecursions<-,flowFP,numeric-method | Methods to set or get nRecursions
nRecursions<-,flowFPModel,numeric-method | Methods to set or get nRecursions
parameters,flowFP-method | Return the parameters considered for fingerprinting
parameters,flowFPModel-method | Return the parameters considered for fingerprinting
parameters-methods | Return the parameters considered for fingerprinting
plate | 96 well plate data.
plot,flowFP,flowFrame-method | Methods for visualizing flowFP objects
plot,flowFP,flowSet-method | Methods for visualizing flowFP objects
plot,flowFP,missing-method | Methods for visualizing flowFP objects
plot,flowFPModel,flowFrame-method | Methods for visualizing flowFP objects
plot,flowFPModel,flowSet-method | Methods for visualizing flowFP objects
plot,flowFPModel,missing-method | Methods for visualizing flowFP objects
plot,flowFPPlex,missing-method | Methods for visualizing flowFP objects
plot-methods | Methods for visualizing flowFP objects
sampleClasses | Gets/Sets the sample classes for a fingerprint.
sampleClasses,flowFP-method | Gets/Sets the sample classes for a fingerprint.
sampleClasses,flowFPPlex-method | Gets/Sets the sample classes for a fingerprint.
sampleClasses-methods | Gets/Sets the sample classes for a fingerprint.
sampleClasses<- | Gets/Sets the sample classes for a fingerprint.
sampleClasses<-,flowFP-method | Gets/Sets the sample classes for a fingerprint.
sampleNames | Methods to return sample names from a flowFP object.
sampleNames,flowFP-method | Methods to return sample names from a flowFP object.
sampleNames,flowFPPlex-method | Methods to return sample names from a flowFP object.
sampleNames-methods | Methods to return sample names from a flowFP object.
show,flowFP-method | Methods to view flowFP objects
show,flowFPModel-method | Methods to view flowFP objects
show,flowFPPlex-method | Methods to view flowFP objects
show-methods | Methods to view flowFP objects
summary,flowFP-method | Summerizes a flowFP object.
summary-methods | Summerizes a flowFP object.
tags | Returns tags from a flowFP object.
tags,flowFP-method | Returns tags from a flowFP object.
tags-methods | Returns tags from a flowFP object.
[,flowFP,character-method | Indexing methods for flowFP and flowFPPlex
[,flowFP,numeric-method | Indexing methods for flowFP and flowFPPlex
[,flowFPPlex,ANY-method | Indexing methods for flowFP and flowFPPlex
[-methods | Indexing methods for flowFP and flowFPPlex
[[,flowFPPlex,ANY-method | Indexing methods for flowFP and flowFPPlex
[[-methods | Indexing methods for flowFP and flowFPPlex
[[<-,flowFPPlex,numeric,ANY,flowFP-method | Indexing methods for flowFP and flowFPPlex