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@article{Mccarthy:2009p309,
author = {D. J Mccarthy and G. K Smyth}, 
journal = {Bioinformatics},
title = {Testing significance relative to a fold-change threshold is a TREAT},
number = {6},
pages = {765--771},
volume = {25},
year = {2009},
month = {Jan},
date-added = {2009-05-19 23:56:23 +1000},
date-modified = {2009-07-03 11:54:22 +1000},
doi = {10.1093/bioinformatics/btp053},
local-url = {file://localhost/Users/davismcc/Documents/Papers/2009/Mccarthy/Bioinformatics%202009%20Mccarthy.pdf},
uri = {papers://A0632BA1-8623-4549-A387-1B9B9756A330/Paper/p309},
read = {Yes},
rating = {5}
}


@article{Benjamini95,
author = {Y. Benjamini and Y. Hochberg}, 
journal = {Journal of the  Royal Statistical Society: Series B},
title = {Controlling the false discovery rate: a practical and powerful approach to multiple testing},
number = {},
pages = {289--300},
volume = {57},
year = {1995},
month = {},
date-added = {2009-05-19 23:56:23 +1000},
date-modified = {2009-07-03 11:54:22 +1000},
doi = {},
local-url = {f},
uri = {},
read = {Yes},
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@article{Li08,
author = {H. R Li and M. T Lovci and Y-S. Kwon and M. G Rosenfeld and X-D. Fua and G. W Yeo}, 
journal = {Proceedings of the National Academy of Sciences of the USA},
title = {Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model},
number = {51},
pages = {20179--20184},
volume = {105},
year = {2008},
month = {},
date-added = {2009-05-19 23:56:23 +1000},
date-modified = {2009-07-03 11:54:22 +1000},
doi = {},
local-url = {f},
uri = {},
read = {Yes},
rating = {5}
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@article{Robinson07,
author = {M. D Robinson and G. K Smyth}, 
journal = {Bioinformatics},
title = {Moderated statistical tests for assessing differences in tag abundance},
number = {21},
pages = {2881--2887},
volume = {23},
year = {2007},
month = {},
date-added = {2009-05-19 23:56:23 +1000},
date-modified = {2009-07-03 11:54:22 +1000},
doi = {},
local-url = {f},
uri = {},
read = {Yes},
rating = {5}
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@article{Robinson08,
author = {M. D Robinson and G. K Smyth}, 
journal = {Biostatistics},
title = {Small-sample estimation of negative binomial dispersion, with applications to SAGE data},
number = {2},
pages = {321--332},
volume = {9},
year = {2008},
month = {},
date-added = {2009-05-19 23:56:23 +1000},
date-modified = {2009-07-03 11:54:22 +1000},
doi = {},
local-url = {f},
uri = {},
read = {Yes},
rating = {5}
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@article{Zhang:1997p13,
author = {L. Zhang and W. Zhou and V. E Velculescu and S. E Kern and R. H Hruban and S. R Hamilton and B. Vogelstein and K. W Kinzler}, 
journal = {Science},
title = {Gene Expression Profiles in Normal and Cancer Cells},
number = {5316},
pages = {1268--1272},
volume = {276},
year = {1997},
month = {May},
date-added = {2009-04-15 12:49:03 +1000},
date-modified = {2009-08-23 23:52:29 +1000},
local-url = {file://localhost/Users/davismcc/Documents/Papers/1997/Zhang/Science%201997%20Zhang.pdf},
uri = {papers://A0632BA1-8623-4549-A387-1B9B9756A330/Paper/p13},
read = {Yes},
rating = {0}
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@article{Li:2006p382,
author = {H. R Li and J. Wang-Rodriguez and T. M Nair and J. M Yeakley and Y. S Kwon and M. Bibikova and C. Zheng and L. Zhou and K. Zhang and T. Downs}, 
journal = {Cancer Research},
title = {Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens},
number = {8},
pages = {4079--4088},
volume = {66},
year = {2006},
date-added = {2009-07-06 11:20:00 +1000},
date-modified = {2009-07-08 22:44:04 +1000},
pmid = {7060559502713310289&hl=en&num=50related:UUy8knUl_GEJ:scholar.google.com/&hl=en&num=50},
local-url = {file://localhost/Users/davismcc/Documents/Papers/2006/Li/Cancer%20Research%202006%20Li.pdf},
uri = {papers://A0632BA1-8623-4549-A387-1B9B9756A330/Paper/p382},
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@article{THoen:2008p9,
author = {'t Hoen, P. A. C and Y. Ariyurek and H. H Thygesen and E. Vreugdenhil and R. H. A. M Vossen and R. X De Menezes and J. M Boer and G-J. B Van Ommen and J. T Den Dunnen}, 
journal = {Nucleic Acids Research},
title = {Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms},
number = {21},
pages = {e141},
volume = {36},
year = {2008},
date-added = {2009-04-15 12:49:08 +1000},
date-modified = {2009-08-24 00:26:03 +1000},
local-url = {file://localhost/Users/davismcc/Documents/Papers/2008/T%20Hoen/Nucleic%20Acids%20Research%202008%20T%20Hoen.pdf},
uri = {papers://A0632BA1-8623-4549-A387-1B9B9756A330/Paper/p9},
read = {Yes},
rating = {0}
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