# Find chromosome regions showing common gains/losses

## Documentation for package ‘cghMCR’ version 1.4.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

cghMCR | The constructor for the cghMCR class
cghMCR-class | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
colnames,SGOL-method | Methods for Function colnames/rownames in Package 'cghMCR'
colnames-methods | Methods for Function colnames/rownames in Package 'cghMCR'
getSegments | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments,marrayNorm-method | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments,marrayRaw-method | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
gol | Class "SGOL" reprents segments of gain or loss across samples
gol,SGOL-method | Class "SGOL" reprents segments of gain or loss across samples
MCR | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
MCR,cghMCR-method | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
mergeMCRProbes | A function that appends probe ids to a data frame containing MCRs
method,SGOL-method | Class "SGOL" reprents segments of gain or loss across samples
plot | Class "SGOL" reprents segments of gain or loss across samples
plot,ANY-method | Class "SGOL" reprents segments of gain or loss across samples
plot,methods | Class "SGOL" reprents segments of gain or loss across samples
plot,SGOL,ANY-method | Class "SGOL" reprents segments of gain or loss across samples
plot,SGOL-method | Class "SGOL" reprents segments of gain or loss across samples
plot.DNAcopy | A function to plot the original data along with the segments identified using segment of DNAcopy.
rownames,SGOL-method | Methods for Function colnames/rownames in Package 'cghMCR'
rownames-methods | Methods for Function colnames/rownames in Package 'cghMCR'
segData | The constructor for the cghMCR class
SGOL | Class "SGOL" reprents segments of gain or loss across samples
SGOL-class | Class "SGOL" reprents segments of gain or loss across samples
threshold,SGOL-method | Class "SGOL" reprents segments of gain or loss across samples
[,SGOL-method | Methods for Function colnames/rownames in Package 'cghMCR'
[-methods | Methods for Function colnames/rownames in Package 'cghMCR'