Package: IRanges
Title: Infrastructure for manipulating intervals on sequences
Description: The IRanges class and its extensions are low-level
        containers for storing sets of integer ranges. A typical use of
        these containers in biology is for representing a set of
        chromosome regions. More specific extensions of the IRanges
        class will typically allow the storage of additional
        information attached to each chromosome region as well as a
        hierarchical relationship between these regions.
Version: 1.4.16
Author: H. Pages, P. Aboyoun and M. Lawrence
Maintainer: Biocore Team c/o BioC user list
        <bioconductor@stat.math.ethz.ch>
biocViews: Infrastructure, Genetics
Depends: R (>= 2.8.0), methods, utils, stats
Imports: methods, utils, stats
Suggests: RUnit
License: Artistic-2.0
ExtraLicenses: The following files in the 'src' directory are licensed
        for all use by Jim Kent, in a manner compatible with the
        Artistic 2.0 license: common.c/h, memalloc.c/h, localmem.c/h,
        hash.c/h, errabort.c/h, rbTree.c/h, dlist.c/h, errCatch.h
Collate: validity-utils.R utils.R strutils.R endoapply.R runstat.R
        Annotated-class.R Sequence-class.R DataTable-class.R
        DataTable-stats.R AtomicList-class.R Ranges-class.R
        Ranges-comparison.R IRanges-class.R IRanges-constructor.R
        IRanges-utils.R IRanges-setops.R IntervalTree-class.R
        IntervalTree-utils.R Grouping-class.R Views-class.R Rle-class.R
        RleViews-class.R RleViews-utils.R SharedVector-class.R
        SharedRaw-class.R SharedInteger-class.R SharedDouble-class.R
        XVector-class.R XRaw-class.R XInteger-class.R XDouble-class.R
        XVectorList-class.R XIntegerViews-class.R XIntegerViews-utils.R
        SimpleList-class.R CompressedList-class.R AtomicList-impl.R
        DataFrame-class.R DataFrame-utils.R DataFrameList-class.R
        DataFrameList-utils.R RangesList-class.R RleViewsList-class.R
        RleViewsList-utils.R MaskCollection-class.R RangedData-class.R
        FilterRules-class.R RDApplyParams-class.R RangedData-utils.R
        RangesMatching-class.R RangesMatchingList-class.R
        Alignment-class.R read.Mask.R xvcopy.R reverse.R coverage.R
        updateObject.R debug.R zzz.R
Packaged: 2010-03-20 08:37:34 UTC; biocbuild
Built: R 2.10.1; i386-pc-mingw32; 2010-03-20 13:53:36 UTC; windows
