addSnpPdata	addSnpPdata
addSnpPdata,ExpressionSet-method	addSnpPdata
checkForFileInPath	checkForFileInPath
doProbeLinear	doProbeLinear
doProbeTTest	doProbeTTest
exampleProbeLevelSet	exampleProbeLevelSet
excludeDoubleMatchingProbes	excludeDoubleMatchingProbes
excludeDoubleMatchingProbes,ProbeLevelSet-method	excludeDoubleMatchingProbes
exonStructure	exonStructure
findSequenceInGenome	findSequenceInGenome
GeneRegionScan	geneRegionScan
geneRegionScan	geneRegionScan
geneRegionScan,ExpressionSet-method	geneRegionScan
genomic	genomic
getLocalMetaprobeIntensities	getLocalMetaprobeIntensities
getLocalProbeIntensities	getLocalProbeIntensities
getMetaprobesetsFromRegionOfInterest	getMetaprobesetsFromRegionOfInterest
getProbeLevelAnnotationForExonArrays	getProbeLevelAnnotationForExonArrays
getProbesetsFromRegionOfInterest	getProbesetsFromRegionOfInterest
getSequence	getSequence
getSequence,ProbeLevelSet-method	getSequence
getServerProbeIntensities	getServerProbeIntensities
mrna	mrna
Nondocumented-objects	Nondocumented-objects
plotCoexpression	plotCoexpression
plotCoexpression,ExpressionSet-method	plotCoexpression
plotOnGene	plotOnGene
plotOnGene,ExpressionSet-method	plotOnGene
plotStatistics	plotStatistics
ProbeLevelSet	ProbeLevelSet-class
ProbeLevelSet-class	ProbeLevelSet-class
readGeneInput	readGeneInput
translateSampleNames	translateSampleNames
translateSampleNames,ExpressionSet-method	translateSampleNames
