GGbase-package	GGBase-package
chrnum	casting
chrnum,character-method	casting
chrnum,numeric-method	casting
chrnum-class	casting
cnumOrMissing	casting
cnumOrMissing-class	casting
coerce,smlSet,ExpressionSet-method	smlSet-class
combine,filteredMultiGwSnpScreenResult,filteredMultiGwSnpScreenResult-method	gwSnpScreenResult-class
combine,multiGwSnpScreenResult,multiGwSnpScreenResult-method	gwSnpScreenResult-class
combine,smlSet,smlSet-method	smlSet-class
cwSnpScreenResult-class	gwSnpScreenResult-class
exprs,smlSet-method	smlSet-class
featureFilter	featureFilter
filteredGwSnpScreenResult-class	gwSnpScreenResult-class
filteredMultiGwSnpScreenResult-class	gwSnpScreenResult-class
genesym	casting
genesym,character-method	casting
genesym-class	casting
getAlleles	smlSet-class
getAlleles,smlSet,rsid-method	smlSet-class
getSnpLocs	snpLocs.Hs
getSnpLocs,smlSet,chrnum-method	snpLocs.Hs
getSnpLocs,smlSet,missing-method	snpLocs.Hs
GGbase	GGBase-package
gwSnpScreenResult	gwSnpScreenResult-class
gwSnpScreenResult-class	gwSnpScreenResult-class
hsSnpLocs	snpLocs.Hs
MAFfilter	MAFfilter
multiCisTestResult-class	multiCisTestResult-class
multiGwSnpScreenResult-class	gwSnpScreenResult-class
phenoVar	casting
phenoVar,character-method	casting
phenoVar-class	casting
plot,cwSnpScreenResult,ANY-method	gwSnpScreenResult-class
plot,gwSnpScreenResult,ANY-method	gwSnpScreenResult-class
plot,multiGwSnpScreenResult,ANY-method	gwSnpScreenResult-class
plot_EvG	plot_EvG-methods
plot_EvG,genesym,rsid,smlSet-method	plot_EvG-methods
plot_EvG,probeId,rsid,smlSet-method	plot_EvG-methods
plot_EvG-methods	plot_EvG-methods
plot_EvG2	plot_EvG-methods
plot_EvG2,genesym,rsid,rsid,smlSet-method	plot_EvG-methods
plot_EvG2,probeId,rsid,rsid,smlSet-method	plot_EvG-methods
probeId	casting
probeId,character-method	casting
probeId-class	casting
rsid	casting
rsid,character-method	casting
rsid,numeric-method	casting
rsid-class	casting
SessionInfo-class	SessionInfo-class
show,chrnum-method	casting
show,cwSnpScreenResult-method	gwSnpScreenResult-class
show,filteredGwSnpScreenResult-method	gwSnpScreenResult-class
show,filteredMultiGwSnpScreenResult-method	gwSnpScreenResult-class
show,gwSnpScreenResult-method	gwSnpScreenResult-class
show,multiCisTestResult-method	multiCisTestResult-class
show,multiGwSnpScreenResult-method	gwSnpScreenResult-class
show,rsid-method	casting
show,smlSet-method	smlSet-class
show,smlSummary-method	smlSummary
show,snpLocs-method	snpLocs.Hs
smlEnv	smlSet-class
smlEnv,smlSet-method	smlSet-class
smList	smlSet-class
smList,smlSet-method	smlSet-class
smlSet	smlSet-class
smlSet-class	smlSet-class
smlSummary	smlSummary
smlSummary-class	smlSummary
snpdepth	casting
snpdepth-class	casting
snpLocs-class	snpLocs.Hs
snpLocs.Hs	snpLocs.Hs
snpLocs.Hs,chrnum,missing-method	snpLocs.Hs
snpLocs.Hs,chrnum,rsid-method	snpLocs.Hs
snpLocs.Hs,chrnum.missing-method	snpLocs.Hs
snpLocs.Hs,chrnum.rsid-method	snpLocs.Hs
snpLocs.Hs,missing,rsid-method	snpLocs.Hs
snpLocs.Hs,rsid,ANY-method	snpLocs.Hs
snpLocs.Hs,rsid-method	snpLocs.Hs
snpLocs.Hs,sid,ANY-method	snpLocs.Hs
snpNames	smlSet-class
snpNames,smlSet,chrnum-method	smlSet-class
snpNames,smlSet,missing-method	smlSet-class
snps	smlSet-class
snps,smlSet,chrnum-method	smlSet-class
snpsNear	snpsNear
[,cwSnpScreenResult,ANY,ANY,ANY-method	gwSnpScreenResult-class
[,gwSnpScreenResult,ANY,ANY,ANY-method	gwSnpScreenResult-class
[,smlSet,ANY,ANY,ANY-method	smlSet-class
[,snp.matrix,ANY,rsid,ANY-method	smlSet-class
