# Identify Differentially Expressed Genes from RNA-seq data

## Documentation for package ‘DEGseq’ version 1.0.5

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

DEGexp | DEGexp: Identifying Differentially Expressed Genes from gene expression data
DEGseq | DEGseq: Identify Differentially Expressed Genes from RNA-seq data
GeneExpExample1000 | GeneExpExample1000
GeneExpExample5000 | GeneExpExample5000
getGeneExp | getGeneExp: count the number of reads and calculate the RPKM for each gene
kidneyChr21.bed | kidneyChr21.bed
liverChr21.bed | liverChr21.bed
readGeneExp | readGeneExp: read gene expression values to a matrix
refFlatChr21 | refFlatChr21
samWrapper | samWrapper: A Wrapper (with some modification) of the functions in the package samr to identify differentially expressed genes for the RNA-seq data from two groups of paired or unpaired samples.