# Classification for Biological Sequences

## Documentation for package ‘BioSeqClass’ version 1.0.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

.callPerl | Assistant Functions
.onLoad | Load packages and data
.pathPerl | Assistant Functions
aa.index | Assistant Functions
aaClass | Assistant Functions
aligndisHR | Homolog Reduction
basic | Assistant Functions
cdhitHR | Homolog Reduction
classify | Classification
classifyModelBAG | Classification Model
classifyModelCTREE | Classification Model
classifyModelCTREELIBSVM | Classification Model
classifyModelKNN | Classification Model
classifyModelLIBSVM | Classification Model
classifyModelNB | Classification Model
classifyModelNNET | Classification Model
classifyModelRF | Classification Model
classifyModelRPART | Classification Model
classifyModelSVMLIGHT | Classification Model
classifyModelTree | Classification Model
combine | Classify Functions
DiProDB | Assistant Functions
distance | Homolog Reduction
dssp.ss | Assistant Functions
elements | Assistant Functions
featureAAindex | Feature Coding by physicochemical/biochemical properties in AAindex
featureACF | Feature Coding by physicochemical/biochemical properties in AAindex
featureACH | Feature Coding by hydrophobicity
featureACI | Feature Coding by physicochemical/biochemical properties in AAindex
featureBDNAVIDEO | Feature Coding by DNA/RNA property
featureBinary | Feature Coding by Binary Vectors
featureCKSAAP | Feature Coding by k-spaced Aminoacids/Base Pairs
featureCTD | Feature Coding by composition, transition and distribution
featureDIPRODB | Feature Coding by Dinucleotide Property
featureDOMAIN | Feature Coding by doamin organization
featureFragmentComposition | Feature Coding by the composition of k-mer fragments
featureGapPairComposition | Feature Coding by g-spaced aminoacids/bases pairs
featureHydro | Feature Coding by hydrophobicity
featurePseudoAAComp | Feature Coding by Pseudo Amino Acid Composiion
featurePSSM | Feature Coding
featureSSC | Feature Coding by secondary structure
getDSSP | Feature Coding by secondary structure
getNegSite | Homolog Reduction
getTrain | Homolog Reduction
hr | Homolog Reduction
model | Classification Model
performance | Performance Evaluation
predictPFAM | Feature Coding by doamin organization
predictPROTEUS | Feature Coding by secondary structure
PROPERTY | Assistant Functions
pwm | Assistant Functions
selectFFS | Feature Selection by FFS
selectWeka | Feature Selection by Weka
sub.seq | Assistant Functions