Massvectorlist-class {msbase} | R Documentation

## Class "Massvectorlist"

### Description

Container class for `Massvector-class`

### Objects from the Class

Objects can be created by calls of the form `new("Massvectorlist", ...)`.

### Slots

`.Data`:
  Object of class `"list"`, list of `Massvector-class`
`info`:
  Object of class `"character"`, information field
`project`:
  Object of class `"character"`, e.g. project id
`experiment`:
  Object of class `"character"`, e.g. experiment id
`uniq`:
  Object of class `"logical"` if `TRUE` the `info` field in the stored `Massvector`s names must be unique.

### Extends

Class `"Mlist"`, directly. Class `"list"`, by class `"Mlist"`.

### Methods

[
  `signature(x = "Massvectorlist")`
[[<-
  `signature(x = "Massvectorlist")`
[<-
  `signature(x = "Massvectorlist")`
coerce
  `signature(from = "Massvectorlist", to = "matrix")`
coerce
  `signature(from = "Massvectorlist", to = "data.frame")`
col.plot
  `signature(x = "Massvectorlist")`: strip chart with color coded intensities
hist
  `signature(x = "Massvectorlist")`: histogram of all masses in the massvectorlist
mvmeannorm
  `signature(object = "Massvectorlist")`:
mvscale
  `signature(object = "Massvectorlist")`: `scale`
nrmatch
  `signature(obx = "Massvectorlist", oby = "Massvector")`: ...
nrmatch
  `signature(obx = "Massvectorlist", oby = "NULL")`: ...
pep.plot
  `signature(x = "Massvectorlist", y = "missing")`: ...
plot
  `signature(x = "Massvectorlist", y = "missing")`:
readBruker
  `signature(object = "Massvectorlist")`: ...
readMV
  `signature(object = "Massvectorlist", src = "character")`: ...
show
  `signature(object = "Massvectorlist")`: ...
unlist
  `signature(x = "Massvectorlist")`: casts Massvectorlist into Massvector
writeMV
  `signature(object = "Massvectorlist", path = "character")`: ...

### Author(s)

Witold E. Wolski witek96@users.sourceforge.net http://r4proteomics.sourceforge.netla

### See Also

`fdist-methods,fbinary-methods,fcor-methods`, ,`Massvectorlist-class`,`fintersect-methods`,`gamasses-methods` ,`finterS-methods`,`funion-methods`,`nrmatch-methods`

### Examples

    new("Massvectorlist")
    new("Massvectorlist",info="dumy",project="dummy",experiment="dummy")
    data(pldata)
    plot(pldata)
    hist(pldata)
    pep.plot(pldata,cex=0.4)
    col.plot(pldata,col=2) #intensity color coded
    tmp <- unlist(pldata)
    length(tmp)
    rm(tmp)

[Package msbase version 1.1.1 Index]