plot.MACATevalScoring {macat} | R Documentation

## Plot function for MACATevalScoring objects.

### Description

Function plots scores, 0.025 and 0.975 quantiles of the permuted scores (grey lines), sliding average score (red line), highlighted regions (yellow dotted) where the score exides the quantiles, along chromosome.

### Usage

    ## S3 method for class 'MACATevalScoring':
    plot(x, output = "x11",
                  HTMLfilename = NULL, mytitle = NULL, new.device = TRUE, ...)

### Arguments

`x` | MACATevalScoring object.
`output` | plot "x11" or create a "html" -file with further information. HTML-page will open automatically.
`HTMLfilename` | HTML-filename, default:`Results<CHOMOSOME>_<CLASS>.html`
`mytitle` | Title of HTML-page, default: “Results of class <CLASS> on chromosome <CHROMOSOME>”
`new.device` | if FALSE: Posibility to plot several plots in one device
`...` | further arguments passed on to generic function `plot`

### Details

One can create a HTML-page on-the-fly if argument output='html'. The HTML-page provids informations about highlighted regions in the plot. Furthermore there are clickable LocusIDs for further analysis.

### Author(s)

MACAT development team

### See Also

`evalScoring`, `get.results`

### Examples

     ## Not run:
     # see this-is-escaped-codenormal-bracket32bracket-normal for an example

    ## End(Not run)

[Package macat version 1.2.0 Index]