clusterSignif-class {goCluster} | R Documentation

## Class "clusterSignif"

### Description

An abstract class that provides a framework for the significance analysis methods provided by `goCluster`.

### Details

This class provides a wrapper for the selection algorithms employed by `goCluster`. The class provides a slot to hold the class that is being used for the statistical analysis and a slot for the selected annotation terms.

### Slots

`statset`:
  Object of class `"list"`, this slot contains the statistical values that the class will use in order to decide which annotation terms are interesting or not. This can be a simple copy of the underlying `clusterStatistic` object but it can as well hold corrected value depending on the function of this class.
`selection`:
  Object of class `"list"`, this is the list of elements that were selected by the algorithm as being interesting.
`stat`:
  Object of class `"clusterStatistic"`, the statistical method that is used to identify interesting gene groups.

Additional slots are described in the documentation for the `clusterModule-class`.

### Extends

Class `"clusterModule"`, directly.

### Methods

config
  `signature(object = "clusterModule")`: This function does nothing since this is an abstract class.
setup
  `signature(object = "clusterModule")`: This function returns an empty list since this is an abstract class.
setup<-
  `signature(object = "clusterModule")`: This function does nothing since this is an abstract class.
execute
  `signature(object = "clusterModule")`: This function does nothing since this is an abstract class.
execute<-
  `signature(object = "clusterModule")`: This function does nothing since this is an abstract class.
reset
  `signature(object = "clusterModule")`: This function resets the `clusterset`-slot to an empty list.

### Author(s)

Gunnar Wrobel, http://www.gunnarwrobel.de.

### See Also

`goCluster-class`, `clusterModule-class`, `clusterSignifBase-class`, `clusterSignifBonferroni-class`, `clusterSignifFDR-class`

[Package goCluster version 1.0.0 Index]