# Microarray Analysis tool

## Documentation for package `genArise' version 1.0.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

a.arise | A Arise
alter.unique | Remove Duplicates
bg.correct | Background Correction
classes | Classes Defined by this Package
cys.plot | Data Visualization: Cy3 vs Cy5
DataSet-class | DataSet - class
filter.spot | Intensity-based filtering of array elements
genArise | GUI: Graphical User Interface
genMerge | genMerge: Post-Genomic Analysis
global.norm | Global Normalization of Spot
grid.norm | Normalization by grid of Spot
i.arise | I Arise
imageLimma | Image Plot of Microarray
m.arise | M Arise
ma.plot | Data Visualization: M vs. A plot
meanUnique | Remove Duplicates
r.arise | Get R value
read.spot | Read Spot from File
ri.plot | Data Visualization: R vs I
Simon | Dataset: Little fragment of a microarray from IFC UNAM
Spot-class | Spot - class
spotUnique | Replicate filtering
write.dataSet | Write dataSet
write.spot | Write Spot
WT.dataset | Microarray from the IFC
Zscore | Z-scores for identifying differential expression
Zscore.plot | Z-score Data Visualization: R vs I or M vs A