writeMAGEML             package:RMAGEML             R Documentation

_w_r_i_t_e _M_A_G_E_M_L _d_o_c_u_m_e_n_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function writes MAGEML documents from MAGE Object references.

_U_s_a_g_e:

     writeMAGEML( mageOM = NULL, directory = ".", file = NULL)

_A_r_g_u_m_e_n_t_s:

  mageOM: Reference to MAGE Object Model

directory: Directory to which the MAGEML file should be written to

    file: Filename.  Note should have extension xml e.g. update.xml

_A_u_t_h_o_r(_s):

     Steffen Durinck, <URL: http://www.esat.kuleuven.ac.be/~sdurinck>
       Joke Allemeersch, <URL:
     http://www.esat.kuleuven.ac.be/~jallemee>.

_R_e_f_e_r_e_n_c_e_s:

     Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S,
     Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL,
     Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J,
     Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D,
     Stoeckert CJ Jr and Brazma A. Design and implementation of
     microarray gene expression markup language (MAGE-ML). Genome Biol.
     2002 Aug 23;3(9):RESEARCH0046.

_S_e_e _A_l_s_o:

     'importMAGEOM','writeMAGEML','addDerivedData','addNormToMAGEML'

_E_x_a_m_p_l_e_s:

     #data<-system.file("MAGEMLdata", package="RMAGEML")
     #mageom<-importMAGEOM(directory = data)
     #writeMAGEML(mageOM = mageom, directory = ".", file = "updatedMAGEML.xml")

