# Handling MAGEML documents

## Documentation for package `RMAGEML' version 2.1.0

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

160miame2.txt.xml | Example dataset in MAGEML-format
addDerivedData | Adding a derived dataset to an existing MAGEML document
addNormToMAGEML | Adding a norm object to an existing MAGEML document
am2730miame | Example dataset in MAGEML-format
am2731miame | Example dataset in MAGEML-format
am2732m | Example dataset in MAGEML-format
am2736m | Example dataset in MAGEML-format
am2737m | Example dataset in MAGEML-format
Flounder_Environmental_Tyne_vs_Alde_Male.xml | Example dataset in MAGEML-format
getArrayID | Get ArrayID's
getArrayLayout | Creation of a marrayLayout object
getArrayLayoutLimma | Get layout for limma
getGnames | Creation of a Gnames marrayInfo object
getNumberOfFeatures | Retrieves number of features
getOrganization | Retrieves Organization who did experiment
getQTypeDescription | Retrieves description of a QuantitationType
getQuantitationTypes | Retrieves QuantitationTypes from an experiment
importMAGEML | import MAGEML documents
importMAGEOM | import MAGEOM of MAGEML documents
makeMarrayRaw | Creation of a marrayRaw object
makeRG | Creation of a RGList object
MEXP14 | Example dataset in MAGEML-format
tm1826m | Example dataset in MAGEML-format
tm1827m | Example dataset in MAGEML-format
tm1829m | Example dataset in MAGEML-format
tm1830m | Example dataset in MAGEML-format
tm1831m | Example dataset in MAGEML-format
writeMAGEML | write MAGEML documents