getArrayLayoutLimma         package:RMAGEML         R Documentation

_G_e_t _l_a_y_o_u_t _f_o_r _l_i_m_m_a

_D_e_s_c_r_i_p_t_i_o_n:

     This function gets the genes dataframe.

_U_s_a_g_e:

     getArrayLayoutLimma( mageOM, DED = "none" )

_A_r_g_u_m_e_n_t_s:

  mageOM: Reference to MAGE Object Model

     DED: the DesignElement Dimension

_A_u_t_h_o_r(_s):

     Steffen Durinck, <URL: http://www.esat.kuleuven.ac.be/~sdurinck>
       Joke Allemeersch, <URL:
     http://www.esat.kuleuven.ac.be/~jallemee>.

_R_e_f_e_r_e_n_c_e_s:

     Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S,
     Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL,
     Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J,
     Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D,
     Stoeckert CJ Jr and Brazma A. Design and implementation of
     microarray gene expression markup language (MAGE-ML). Genome Biol.
     2002 Aug 23;3(9):RESEARCH0046.

_S_e_e _A_l_s_o:

     'importMAGEOM'

_E_x_a_m_p_l_e_s:

     data<-system.file("MAGEMLdata", package="RMAGEML")
     #To obtain a marrayInfo object containing the database identifiers of the features present on the array.#
     mageom<-importMAGEOM(directory=data)
     getArrayLayoutLimma(mageom, DED="DED:707")

