# Heterogeneous error model for analysis of microarray data

## Documentation for package `HEM' version 1.0.4

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

am.tran | AM transformation for LPE
base.error.Olig | Baseline error estimation for oligonucleotide arrays
boot.base.error.Olig | Baseline error bootstrap estimation for oligonucleotide arrays
fixbound.predict.smooth.spline | Prediction using smoothing spine
hem | Heterogeneous Error Model (HEM) for Microarray Data
hem.eb.prior | Empirical Bayes (EB) Prior Specification
hem.fdr | FDR Evaluation
hem.null.one | Generation of null data
hem.null.two | Generation of null data
hem.preproc | Preprocessing
immune | Gene Expression Data for a mouse immune response study
mubcp | Gene expression data for mouse B cell development
nonpar.error.Olig | Baseline error nonparametric estimation for oligonucleotide arrays
nonpar.rep.error.Olig | Baseline error nonparametric estimation for oligonucleotide arrays
par.error.Olig | Baseline error parametric estimation for oligonucleotide arrays
par.rep.error.Olig | Baseline error parametric estimation for oligonucleotide arrays
pbrain | Gene expression data for primate brains
permut | Permutation
plotsample | Plotting MCMC samples for diagnosis
quant.norm | Quantile normalization
quant.normalize | Quantile normalization
radiate | Gene expression data for ionizing radiation data