affectationGNL {GLAD} | R Documentation

## Label Assignment

### Description

The function `affectation.profileCGH` gives a status (gained, normal or lost) to each BAC.

### Usage

    affectationGNL.profileCGH(profileCGH, alpha=0.001, region="Region", verbose=FALSE, ...)

### Arguments

`profileCGH` | Object of class `profileCGH`.
`alpha` | Outlier detected in lost or gained region that lie between the α/2 lower tail and the α/2 upper tail of the estimated distribution of the normal DNA population are considered as normal.
`region` | Specifies the name of the variable which has been used during the MSHR clustering by chromosome step.
`verbose` | If `TRUE` some information are printed
`...` |

### Value

An object of class `profileCGH` with the following added information in the data.frame attribute `profileValues` :

`ZoneGNL` | Gain is coded by 1, Loss by -1 and Normal by 0.

### Author(s)

Philippe Hupé, Philippe.Hupe@curie.fr.

### See Also

`glad`.

[Package GLAD version 1.0.1 Index]