# Gain and Loss Analysis of DNA

## Documentation for package `GLAD' version 1.0.1

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

affectationGNL | Label Assignment
array1 | Bladder cancer CGH data
array2 | Bladder cancer CGH data
array3 | Bladder cancer CGH data
arrayCGH | Object of Class arrayCGH
arrayPersp | Perspective image of microarray spots statistic
arrayPlot | Spatial image of microarray spots statistic
chrBreakpoints | Chromosomal breakpoints detection
cluster | Optimal number of cluster
ColorBar | Calibration bar for color images
detectOutliers | Outliers detection
findCluster | Clustering of genomic regions
glad | Analysis of array CGH data
gm00143 | Public CGH data of Snijders
gm01524 | Public CGH data of Snijders
gm01535 | Public CGH data of Snijders
gm01750 | Public CGH data of Snijders
gm02948 | Public CGH data of Snijders
gm03134 | Public CGH data of Snijders
gm03563 | Public CGH data of Snijders
gm03576 | Public CGH data of Snijders
gm04435 | Public CGH data of Snijders
gm05296 | Public CGH data of Snijders
gm07081 | Public CGH data of Snijders
gm07408 | Public CGH data of Snijders
gm10315 | Public CGH data of Snijders
gm13031 | Public CGH data of Snijders
gm13330 | Public CGH data of Snijders
hclustglad | Hierarchical Clustering
kernelpen | Kernelpen function
myPalette | Microarray color palette
profileCGH | Objects of Class profileCGH and profileChr
profileChr | Objects of Class profileCGH and profileChr
removeBreakpoints | Remove breakpoints
removeLevel | Remove breakpoints