maDotPlots {marray} | R Documentation

## Produce a dot plot for replicated controls genes

### Description

A dot plot showing the values of replicated control genes

### Usage

    maDotPlots(data, x = list("maA"), id = "ID", pch, col, nrep = 3, ...)

### Arguments

`data` | Microarray object of class `"marrayRaw"'. By default, plots are done for the first array in the batch.
`x` | Name of accessor method for the spot statistic to be display. E.g. maM to display log-ratios and maA to display log-intensities
`id` | Integer value specifying the index of the array.
`pch` | point style for different control samples.
`col` | color code for different control samples.
`nrep` | Integer value indicating the minimum number of replicated spots required.
`...` | Optional graphical parameters, see `par'.

### Value

Produce a dot plot showing the values of replicated control genes.

### Author(s)

Yee Hwa (Jean) Yang

### Examples

      data(swirl)
      maControls(swirl) <- maGenControls(maGnames(swirl), id="Name")
      maDotPlots(swirl[,1])

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