maQualityMain {marray} | R Documentation

## Calculate basic array wide statistics

### Description

This is based on GenePix output and it calculates summary statistics of various signal to noise ratios.

### Usage

    maQualityMain(mraw, path=".", fname, output = FALSE)
    maQuality(mraw, path=".")

### Arguments

`mraw` | Microarray object of class `"marrayRaw"'. By default, plots are done for the first array in the batch.
`path` | a character string representing the data directory. By default this is set to the current working directory ("."). In the case where "fname" contains the full path name, path should be set to NULL.
`fname` | a vector of character strings representing the name of the output file. This is only used when "output" is TRUE.
`output` | if TRUE, write the results to a file.

### Value

Produce a lists of various summary statistics

### Author(s)

Jean Yee Hwa yang

### See Also

`summary`, `maGenControls`

### Examples

    ##   data(swirl)
    ##   datadir <- system.file("swirldata", package="marray")
    ##   maControls(swirl) <- maGenControls(maGnames(swirl), id="Name")
    ##   maQualityMain(swirl[,1], path=datadir)

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