scaleRefTable          package:arrayQuality          R Documentation

_G_e_n_e_r_a_l _h_y_b_r_i_d_i_z_a_t_i_o_n _q_u_a_l_i_t_y _s_c_a_l_i_n_g

_D_e_s_c_r_i_p_t_i_o_n:

     This function helps you scale quality measures in order to compare
     them on the same plot. It is used on reference slides to create a
     look-up table, which will be used to scale other slides.

_U_s_a_g_e:

     scaleRefTable(reference=NULL, organism=c("Mm", "Hs"))

_A_r_g_u_m_e_n_t_s:

organism: A "character" string naming the organism genome printed on
          the array, either "Mm" or "Hs". By default, organism is set
          to "Mm". It is used to retrieve the corresponding reference
          tables.

reference: A matrix resulting from globalQuality, to be used as
          reference table to compare slides. If 'NULL', the default
          table corresponding to organism will be used.

_V_a_l_u_e:

     A matrix containing median and iqr for each quality measure for
     tested slides.

_A_u_t_h_o_r(_s):

     Agnes Paquet

_S_e_e _A_l_s_o:

     'gpQuality', 'globalQuality', 'qualBoxplot', 'MmScalingTable'

