MAplot {affy} | R Documentation

## Relative M vs. A plots

### Description

Create boxplots of M or M vs A plots. Where M is determined relative to a specified chip or to a pseudo-median reference chip.

### Usage

    MAplot(object,...)
    Mbox(object,...)
    ma.plot(A,M,subset=sample(1:length(M),min(c(10000, length(M)))),show.statistics=TRUE,span=2/3,family.loess="gaussian",cex=2,...)

### Arguments

`object` | An `AffyBatch-class`
`...` | Additional parameters for the routine
`A` | A vector to plot along the horizonal axis
`M` | A vector to plot along vertical axis
`subset` | A set of indices to use when drawing the loess curve
`show.statistics` | If true some summary statistics of the M values are drawn
`span` | span to be used for loess fit.
`family.loess` | `"guassian"` or `"symmetric"` as in `loess`.
`cex` | Size of text when writing summary statistics on plot

### See Also

`mva.pairs`

### Examples

       data(affybatch.example)
       MAplot(affybatch.example)
       Mbox(affybatch.example)

[Package Contents]