\Header{getArrayLayoutLimma}{Get layout for limma}
\keyword{methods}{getArrayLayoutLimma}
\begin{Description}\relax
This function gets the genes dataframe.
\end{Description}
\begin{Usage}
\begin{verbatim}
getArrayLayoutLimma( mageOM, DED = "none" )
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{mageOM}] Reference to MAGE Object Model
\item[\code{DED}] the DesinElement Dimension
\end{ldescription}
\end{Arguments}
\begin{Author}\relax
Steffen Durinck, \url{http://www.esat.kuleuven.ac.be/~sdurinck}\\ 
Joke Allemeersch, \url{http://www.esat.kuleuven.ac.be/~jallemee}.
\end{Author}
\begin{References}\relax
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr and Brazma A.
Design and implementation of microarray gene expression markup language (MAGE-ML).
Genome Biol. 2002 Aug 23;3(9):RESEARCH0046.
\end{References}
\begin{SeeAlso}\relax
\code{\Link{importMAGEOM}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
data<-system.file("MAGEMLdata", package="RMAGEML")
#To obtain a marrayInfo object containing the database identifiers of the features present on the array.#
mageom<-importMAGEOM(directory=data)
getArrayLayoutLimma(mageom, DED="DED:707")
\end{ExampleCode}
\end{Examples}

