# Tools for manipulating GO and microarrays.

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

ALL | Acute Lymphoblastic Leukemia Data from the Ritz Laboratory
Bdists | Distance matrices for the BCR/ABL and NEG subgroups.
combGOGraph | Combine GO Graphs
compCorrGraph | A function to compute a correlation based graph from Gene Expression Data
compGdist | A function to compute the distance between pairs of nodes in a graph.
distCGO | Distances between GO graphs
distDGGO | Distances between GO graphs
enumPairs | Triad Functions
getGOCategory | Functions to Access GO data.
getGOChildren | Functions to Access GO data.
getGOParents | Functions to Access GO data.
getGOTerm | Functions to Access GO data.
GOHyperG | Hypergeometric Tests for GO
GOLeaves | Identify the leaves in a GO Graph
hasGOannote | Check for GO annotation
idx2dimnames | Index to Dimnames
isTriad | Triad Functions
makeGOGraph | Construct a GO Graph
Ndists | Distance matrices for the BCR/ABL and NEG subgroups.
notConn | Find genes that are not connected to the others.
oneGOGraph | Build a GO graph for one identifier
reduce2Degreek | Triad Functions
shortestPath | Shortest Path Analysis
triad | Triad Functions
triadCensus | Triad Functions