# affyPLM - Probe Level Models

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

bg.correct.LESN | LESN - Low End Signal is Noise Background corrections
boxplot,PLMset-method | Class PLMset
cdfName,PLMset-method | Class PLMset
coefs | Class PLMset
coefs,PLMset-method | Class PLMset
coefs.const | Class PLMset
coefs.const,PLMset-method | Class PLMset
coefs.probe | Class PLMset
coefs.probe,PLMset-method | Class PLMset
coefs<-,PLMset-method | Class PLMset
fitPLM | Fit a Probe Level Model to Affymetrix Genechip Data.
getCdfInfo,PLMset-method | Class PLMset
image,PLMset-method | Class PLMset
indexProbes | Class PLMset
indexProbes,PLMset,character-method | Class PLMset
Mbox | Class PLMset
Mbox,PLMset-method | Class PLMset
normalize.AffyBatch.quantiles.probeset | Quantile Normalization applied to probesets
normalize.AffyBatch.scaling | Scaling normalization
normalize.exprSet.contrasts | Normalization applied to exprSets
normalize.exprSet.invariantset | Normalization applied to exprSets
normalize.exprSet.loess | Normalization applied to exprSets
normalize.exprSet.methods | Normalization applied to exprSets
normalize.exprSet.qspline | Normalization applied to exprSets
normalize.exprSet.quantiles | Normalization applied to exprSets
normalize.exprSet.scaling | Normalization applied to exprSets
normalize.scaling | Scaling normalization
PLMset | Class PLMset
PLMset-class | Class PLMset
se | Class PLMset
se,PLMset-method | Class PLMset
se.const | Class PLMset
se.const,PLMset-method | Class PLMset
se.probe | Class PLMset
se.probe,PLMset-method | Class PLMset
se<-,PLMset-method | Class PLMset
show,PLMset-method | Class PLMset
threestep | Three Step expression measures
weights,PLMset-method | Class PLMset
weights<-,PLMset-method | Class PLMset