getBioSequence {MAGEML} | R Documentation

## Get BioSequence information

### Description

This function parses the BioSequence package and returns a bioSequence object.

### Usage

    getBioSequence(file = "", datadir = ".")

### Arguments

`file` | XML document containing the BioSequence package.
`datadir` | The directory where XML file resides.

### Value

bioSequence object

### Author(s)

Joke Allemeersch, http://www.esat.kuleuven.ac.be/~jallemee
Steffen Durinck, http://www.esat.kuleuven.ac.be/~sdurinck.

### References

Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr and Brazma A. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol. 2002 Aug 23;3(9):RESEARCH0046.

### See Also

bioSequence

### Examples

    data <- system.file("data", package="MAGEML")
    getBioSequence(file="Iron.xml",datadir=data)

[Package Contents]