# handling MAGEML documents

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

129DUO_Fe_Cy3 | Example dataset in MAGEML-format
129Duo_Fe_Cy5 | Example dataset in MAGEML-format
129L_Fe_cy3 | Example dataset in MAGEML-format
129L_Fe_cy5 | Example dataset in MAGEML-format
230MM-mod | example dataset in MAGEML-format
235MM-mod | example dataset in MAGEML-format
A-MEXP-5.xml | Example dataset in MAGEML-format
arrayDesign | ArrayDesign class.
arrayDesign-class | ArrayDesign class.
ArrayDesignHandler | Event handler for XML parser
B6_Fe-def_Cy3 | Example dataset in MAGEML-format
B6_Fe-def_Cy5 | Example dataset in MAGEML-format
bioAssayData | BioAssayData class.
bioAssayData-class | BioAssayData class.
BioAssayDataHandler | Event handler for XML parser
bioSample | BioSample class.
bioSample-class | BioSample class.
bioSequence | BioSequence class.
bioSequence-class | BioSequence class.
BioSequenceHandler | Event handler for XML parser
C282YDuo_Cy5 | Example dataset in MAGEML-format
C282YL_FE_cy3 | Example dataset in MAGEML-format
C282Y_D_Cy3 | Example dataset in MAGEML-format
C282Y_L_cy3 | Example dataset in MAGEML-format
C282Y_L_Cy5 | Example dataset in MAGEML-format
C282Y_L_Fe_Cy5 | Example dataset in MAGEML-format
designElement | DesignElement class.
designElement-class | DesignElement class.
DesignElementHandler | Event handler for XML parser
Duocy3 | Example dataset in MAGEML-format
duo_Cy5 | Example dataset in MAGEML-format
E-MEXP-5.xml | Example dataset in MAGEML-format
EMEXP5 | Example dataset in MAGEML-format
getArrayDesign | Get arrayDesign object
getBioAssayData | Get bioAssayData object
getBioSequence | Get BioSequence information
getDesignElement | Get designElement object
getQuantitationTypes | Get quantitationType object
Iron | example dataset in MAGEML-format
LFeCy3 | Example dataset in MAGEML-format
LFe_cy5 | Example dataset in MAGEML-format
L_Cy5 | Example dataset in MAGEML-format
magePackageDetector | Find MAGE-ML packages in xml files
PackageDetectorHandler | Event Handler for XML parser
quantitationType | QuantitationType class.
quantitationType-class | QuantitationType class.
QuantitationTypeHandler | Event handler for XML parser
readMageDesign | Wrapper function for reading MAGE-ML documents
readMageRaw | Creation of marrayRaw object
show,ANY-method | ArrayDesign class.
show,arrayDesign-method | ArrayDesign class.
show,bioAssayData-method | BioAssayData class.
show,bioSample-method | BioSample class.
show,bioSequence-method | BioSequence class.
show,designElement-method | DesignElement class.
show,quantitationType-method | QuantitationType class.
showQuantitationTypes | Show quantitation types
TargetHandler | Event handler for XML parser
widget.readMageDesign | Wrapper function for reading MAGE-ML documents
widget.readMageRaw | Creation of marrayRaw object
_L_Cy3 | Example dataset in MAGEML-format