getBioSequence            package:MAGEML            R Documentation

_G_e_t _B_i_o_S_e_q_u_e_n_c_e _i_n_f_o_r_m_a_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     This function parses the BioSequence package and returns a
     bioSequence object.

_U_s_a_g_e:

     getBioSequence(file = "", datadir = ".")

_A_r_g_u_m_e_n_t_s:

    file: XML document containing the BioSequence package.

 datadir: The directory where XML file resides.

_V_a_l_u_e:

     bioSequence object

_A_u_t_h_o_r(_s):

     Joke Allemeersch, <URL: http://www.esat.kuleuven.ac.be/~jallemee>
      Steffen Durinck, <URL: http://www.esat.kuleuven.ac.be/~sdurinck>.

_R_e_f_e_r_e_n_c_e_s:

     Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S,
     Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL,
     Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J,
     Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D,
     Stoeckert CJ Jr and Brazma A. Design and implementation of
     microarray gene expression markup language (MAGE-ML). Genome Biol.
     2002 Aug 23;3(9):RESEARCH0046.

_S_e_e _A_l_s_o:

     bioSequence

_E_x_a_m_p_l_e_s:

     data <- system.file("data", package="MAGEML")
     getBioSequence(file="Iron.xml",datadir=data)

