\Header{getBioSequence}{Get BioSequence information}
\begin{Description}\relax
This function parses the BioSequence package and returns a bioSequence object.
\end{Description}
\begin{Usage}
\begin{verbatim}getBioSequence(file = "", datadir = ".")\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{file}] XML document containing the BioSequence package.
\item[\code{datadir}] The directory where XML file resides.
\end{ldescription}
\end{Arguments}
\begin{Value}
bioSequence object\end{Value}
\begin{Author}\relax
Joke Allemeersch, \url{http://www.esat.kuleuven.ac.be/~jallemee}\\ Steffen Durinck, \url{http://www.esat.kuleuven.ac.be/~sdurinck}.
\end{Author}
\begin{References}\relax
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr and Brazma A.
Design and implementation of microarray gene expression markup language (MAGE-ML).
Genome Biol. 2002 Aug 23;3(9):RESEARCH0046.
\end{References}
\begin{SeeAlso}\relax
bioSequence
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
data <- system.file("data", package="MAGEML")
getBioSequence(file="Iron.xml",datadir=data)
\end{ExampleCode}
\end{Examples}

