asExprSet	asExprSet
biplot,pcaRes-method	biplot
biplot.pcaRes	biplot.pcaRes
bpca	bpca
BPCA_dostep	BPCA_dostep
BPCA_initmodel	BPCA_initmodel
center	center
center,pcaRes-method	center
centered	centered
centered,pcaRes-method	centered
checkData	checkData
completeObs	completeObs
completeObs,nniRes-method	completeObs
completeObs,pcaRes-method	completeObs
cvstat	cvstat
cvstat,pcaRes-method	cvstat
deletediagonals	deletediagonals
derrorHierarchic	derrorHierarchic
dim.pcaRes	dim.pcaRes
DModX	DModX
DModX,pcaRes-method	DModX
errorHierarchic	errorHierarchic
fitted,pcaRes-method	fitted
fitted.pcaRes	fitted.pcaRes
forkNlpcaNet	forkNlpcaNet
getHierarchicIdx	getHierarchicIdx
helix	helix
kEstimate	kEstimate
kEstimateFast	kEstimateFast
leverage	leverage
leverage,pcaRes-method	leverage
lineSearch	lineSearch
linr	linr
listPcaMethods	listPcaMethods
llsImpute	llsImpute
loadings.pcaRes	loadings.pcaRes
metaboliteData	metaboliteData
metaboliteDataComplete	metaboliteDataComplete
method	method
method,pcaRes-method	method
nFit	pcaNet
nFit-class	pcaNet
nipalsPca	nipalsPca
nlpca	nlpca
nlpcaNet	pcaNet
nlpcaNet-class	pcaNet
nmissing	nmissing
nmissing,nniRes-method	nmissing
nmissing,pcaRes-method	nmissing
nni	nni
nniRes	nniRes
nniRes-class	nniRes
nObs	nObs
nObs,pcaRes-method	nObs
nP	nP
nP,pcaRes-method	nP
nPcs	nPcs
nPcs,pcaRes-method	nPcs
nVar	nVar
nVar,pcaRes-method	nVar
optiAlgCgd	optiAlgCgd
orth	orth
pca	pca
pcaMethods	pcaMethods
pcaMethods-deprecated	pcaMethods-deprecated
pcaRes	pcaRes
pcaRes-class	pcaRes
plot.pcaRes	plot.pcaRes
plotPcs	plotPcs
plotR2	plotR2
ppca	ppca
predict,pcaRes-method	predict
predict.pcaRes	predict.pcaRes
prep	prep
print,nniRes-method	print
print,pcaRes-method	print
Q2	Q2
R2cum	R2cum
R2cum,pcaRes-method	R2cum
repmat	repmat
resid,pcaRes-method	resid
residuals,pcaRes-method	residuals
residuals.pcaRes	residuals.pcaRes
RnipalsPca	RnipalsPca
robustPca	robustPca
robustSvd	robustSvd
scaled	scaled
scaled,pcaRes-method	scaled
scl	scl
scl,pcaRes-method	scl
scores.pcaRes	scores.pcaRes
sDev	sDev
sDev,pcaRes-method	sDev
show,nniRes-method	show
show,pcaRes-method	show
showNniRes	showNniRes
showPcaRes	showPcaRes
simpleEllipse	simpleEllipse
slplot	slplot
slplot,pcaRes-method	slplot
sortFeatures	sortFeatures
summary	summary
summary,pcaRes-method	summary
svdImpute	svdImpute
svdPca	svdPca
tempFixNas	tempFixNas
vector2matrices,matrix-method	vector2matrices
wasna	wasna
wasna,pcaRes-method	wasna
weightsAccount	weightsAccount
