# Cluster Merging for Flow Cytometry Data

## Documentation for package ‘flowMerge’ version 1.2.1

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

flowMerge-package | Merging of mixture components for automated gating of flow cytometry data.
checkForRemoteErrors | Check output of snow clusters for errors
fitPiecewiseLinreg | Fit Piecewise Linear Regression for a list of flowMerge Objects
fitPiecewiseLinreg-method | Methods for fitPiecewiseLinreg in flowMerge package
fitPiecewiseLinreg-methods | Methods for fitPiecewiseLinreg in flowMerge package
flagOutliers | Update the flagOutliers slot in a flowMerge object
flagOutliers-method | Methods to update the flagOutliers slot in a flowMerge object.
flagOutliers-methods | Methods to update the flagOutliers slot in a flowMerge object.
flowClust-class | Class "flowClust"
flowClust.res | A flowClust model fitted to the rituximab data for 1:10 clusters.
flowMerge | Merging of mixture components for automated gating of flow cytometry data.
flowMerge-class | Class "flowMerge"
flowObj | Create a flowObj object from a flowClust and flowFrame object
flowObj-class | Class "flowObj"
getData-method | Class "flowMerge"
getData-method | Class "flowObj"
initPFlowMerge | Initialize a SNOW cluster for use with flowMerge
map | Map matrix of probabilities to class assignments.
merge | Merge clusters in flow cytometry data
merge,flowObj | Merge clusters in flow cytometry data
merge,flowObj-methods | Merge mixture components
merge-method | Class "flowObj"
merge-methods | Merge mixture components
mergeClusters | Cluster merging not meant to be called by the user
mergeClusters2 | Cluster merging not meant to be called by the user
NENT | Extract the Normalized Entropy
pFlowClust | Parallelized FlowClust
pFlowMerge | Parellel call to flowMerge
plot,flowMerge | Methods for plotting flowMerge and flowObj classes
plot,flowObj | Methods for plotting flowMerge and flowObj classes
plot-method | Class "flowMerge"
plot-method | Class "flowObj"
plot-methods | Methods for plotting flowMerge and flowObj classes
RituximabFlowClustFit | A flowClust model fitted to the rituximab data for 1:10 clusters.
show-method | Describe a flowObj or flowMerge object
split-method | Split data in a flowMerge object by cluster
split-methods | Split data in a flowMerge object by cluster
summary-method | Summary methods for flowMerge
updateU | Update uncertainties