# Fingerprinting for Flow Cytometry

## Documentation for package ‘flowFP’ version 1.4.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

flowFP-package | Package overview
append-method | Methods to append flowFP fingerprints to a flowFPPlex
append-methods | Methods to append flowFP fingerprints to a flowFPPlex
binBoundary | Return bin boundaries for a flowFPModel
binBoundary-method | Return bin boundaries for a flowFPModel
binBoundary-methods | Return bin boundaries for a flowFPModel
counts | Method for getting fingerprint data.
counts-method | Method for getting fingerprint data.
flowFP | Fingerprint constructor
flowFP-class | Fingerprint class description.
flowFPModel | Fingerprint model constructor
flowFPModel-class | Fingerprint model class description.
flowFPPlex | Fingerprint collection constructor.
flowFPPlex-class | Fingerprint collection class description.
fs1 | Example FCS flowSet
fs2 | Example FCS flowSet
hasClasses | Returns TRUE if the flowFP has a class factor for its instances
hasClasses-method | Returns TRUE if the flowFP has a class factor for its instances
hasClasses-methods | Returns TRUE if the flowFP has a class factor for its instances
is.flowFP | Test to see if object is a flowFP
is.flowFPModel | Test to see if object is a flowFPModel
is.flowFPPlex | Test to see if object is a flowFPPlex
length-method | The number of fingerprints in a flowFPPlex
length-methods | The number of fingerprints in a flowFPPlex
length<--method | The number of fingerprints in a flowFPPlex
name | Get Model Name
name-method | Get Model Name
name-methods | Get Model Name
nFeatures | Returns the number of features in an object.
nFeatures-method | Returns the number of features in an object.
nFeatures-methods | Returns the number of features in an object.
nInstances | Returns the number of instances in an object.
nInstances-method | Returns the number of instances in an object.
nInstances-methods | Returns the number of instances in an object.
nRecursions | Methods to set or get nRecursions
nRecursions-method | Methods to set or get nRecursions
nRecursions-methods | Methods to set or get nRecursions
nRecursions<- | Methods to set or get nRecursions
nRecursions<--method | Methods to set or get nRecursions
parameters-method | Return the parameters considered for fingerprinting
parameters-methods | Return the parameters considered for fingerprinting
plate | 96 well plate data.
plot-method | Methods for visualizing flowFP objects
plot-methods | Methods for visualizing flowFP objects
sampleClasses | Gets/Sets the sample classes for a fingerprint.
sampleClasses-method | Gets/Sets the sample classes for a fingerprint.
sampleClasses-methods | Gets/Sets the sample classes for a fingerprint.
sampleClasses<- | Gets/Sets the sample classes for a fingerprint.
sampleClasses<--method | Gets/Sets the sample classes for a fingerprint.
sampleNames | Methods to return sample names from a flowFP object.
sampleNames-method | Methods to return sample names from a flowFP object.
sampleNames-methods | Methods to return sample names from a flowFP object.
show-method | Methods to view flowFP objects
show-methods | Methods to view flowFP objects
summary-method | Summerizes a flowFP object.
summary-methods | Summerizes a flowFP object.
tags | Returns tags from a flowFP object.
tags-method | Returns tags from a flowFP object.
tags-methods | Returns tags from a flowFP object.
[-method | Indexing methods for flowFP and flowFPPlex
[-methods | Indexing methods for flowFP and flowFPPlex
[[-method | Indexing methods for flowFP and flowFPPlex
[[-methods | Indexing methods for flowFP and flowFPPlex
[[<--method | Indexing methods for flowFP and flowFPPlex