Annotated-class         Annotated class
AtomicList-class        Lists of Atomic Vectors in Natural and Rle Form
DataFrame-class         External Data Frame
DataFrameList-class     List of DataFrames
DataTable-class         DataTable objects
DataTable-stats         Statistical modeling with DataTable
FilterRules-class       Collection of Filter Rules
GappedRanges-class      GappedRanges objects
Grouping-class          Grouping objects
IRanges-class           IRanges and NormalIRanges objects
IRanges-constructor     The IRanges constructor and supporting
                        functions
IRanges-setops          Set operations on IRanges objects
IRanges-utils           IRanges utility functions
IRangesList-class       List of IRanges and NormalIRanges
IntervalTree-class      Interval Search Trees
MaskCollection-class    MaskCollection objects
RangedData-class        Data on ranges
RangedData-utils        RangedData utility functions
RangedDataList-class    Lists of RangedData
RangedSelection-class   Selection of ranges and columns
Ranges-class            Ranges objects
Ranges-comparison       Ranges comparison
Ranges-utils            Ranges utility functions
RangesList-class        List of Ranges
RangesList-utils        RangesList utility functions
RangesMatching-class    Matchings between Ranges
RangesMatchingList-class
                        List of Matchings between Ranges
Rle-class               Rle objects
RleViews-class          The RleViews class
RleViewsList-class      List of RleViews
Sequence-class          Sequence objects
SimpleList-class        Simple and Compressed List Classes
Views-class             Views objects
Views-utils             Utility functions and numeric summary of Views
                        of numerics
XIntegerViews-class     The XIntegerViews class
XVector-class           XVector objects
XVectorList-class       XVectorList objects
coverage                Coverage across a set of ranges
disjoin                 Making Ranges disjoint
endoapply               Endomorphisms via application of a function
                        over an object's elements
nearest                 Nearest neighbor finding
rdapply                 Applying over spaces
read.Mask               Read a mask from a file
reverse                 Reverse an IRanges object
runstat                 Fixed width running window summaries across
                        vector-like objects
safeExplode             Low-level string utilities
score                   Score accessor and setter
score,AlignmentSpace-method
                        Alignments between sequences
seqapply                Apply function and cast to Sequence
updateObject            Update an IRanges object from BioC 2.4 to
                        current version
