Package: GeneRegionScan
Version: 1.4.0
Date: 2009-10-16
Title: GeneRegionScan
Author: Lasse Folkersen, Diego Diez
Maintainer: Lasse Folkersen <lasse.folkersen@ki.se>
Depends: methods, Biobase (>= 2.5.5), Biostrings
Imports: Biobase (>= 2.5.5), affxparser, RColorBrewer, Biostrings
Suggests: BSgenome, affy, AnnotationDbi
LazyLoad: yes
Description: A package with focus on analysis of discrete regions of
        the genome. This package is useful for investigation of one or
        a few genes using Affymetrix data, since it will extract probe
        level data using the Affymetrix Power Tools application and
        wrap these data into a ProbeLevelSet. A ProbeLevelSet directly
        extends the expressionSet, but includes additional information
        about the sequence of each probe and the probe set it is
        derived from. The package includes a number of functions used
        for plotting these probe level data as a function of location
        along sequences of mRNA-strands. This can be used for analysis
        of variable splicing, and is especially well suited for use
        with exon-array data.
License: GPL (>= 2)
biocViews: Microarray, DataImport, Statistics, SNP, OneChannel,
        Visualization
Packaged: 2010-04-23 01:20:56 UTC; biocbuild
Built: R 2.11.0; ; 2010-04-23 07:37:43 UTC; windows
