GO-terms Semantic Similarity Measures

Documentation for package ‘GOSemSim’ version 1.6.8

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GOSemSim-package	Gene Ontology-based Sematic Similarity Measures
clusterSim	Semantic Similarity Between Two Gene Clusters
geneSim	Semantic Similarity Between two Genes
GOSemSim	Gene Ontology-based Sematic Similarity Measures
goSim	Semantic Similarity Between Two GO Terms
IC	Information content of GO terms
Info_Contents_BP_anopheles	Information content of GO terms
Info_Contents_BP_arabidopsis	Information content of GO terms
Info_Contents_BP_bovine	Information content of GO terms
Info_Contents_BP_canine	Information content of GO terms
Info_Contents_BP_chicken	Information content of GO terms
Info_Contents_BP_chimp	Information content of GO terms
Info_Contents_BP_ecolik12	Information content of GO terms
Info_Contents_BP_ecsakai	Information content of GO terms
Info_Contents_BP_fly	Information content of GO terms
Info_Contents_BP_human	Information content of GO terms
Info_Contents_BP_malaria	Information content of GO terms
Info_Contents_BP_mouse	Information content of GO terms
Info_Contents_BP_pig	Information content of GO terms
Info_Contents_BP_rat	Information content of GO terms
Info_Contents_BP_rhesus	Information content of GO terms
Info_Contents_BP_worm	Information content of GO terms
Info_Contents_BP_xenopus	Information content of GO terms
Info_Contents_BP_yeast	Information content of GO terms
Info_Contents_BP_zebrafish	Information content of GO terms
Info_Contents_CC_anopheles	Information content of GO terms
Info_Contents_CC_arabidopsis	Information content of GO terms
Info_Contents_CC_bovine	Information content of GO terms
Info_Contents_CC_canine	Information content of GO terms
Info_Contents_CC_chicken	Information content of GO terms
Info_Contents_CC_chimp	Information content of GO terms
Info_Contents_CC_ecolik12	Information content of GO terms
Info_Contents_CC_ecsakai	Information content of GO terms
Info_Contents_CC_fly	Information content of GO terms
Info_Contents_CC_human	Information content of GO terms
Info_Contents_CC_malaria	Information content of GO terms
Info_Contents_CC_mouse	Information content of GO terms
Info_Contents_CC_pig	Information content of GO terms
Info_Contents_CC_rat	Information content of GO terms
Info_Contents_CC_rhesus	Information content of GO terms
Info_Contents_CC_worm	Information content of GO terms
Info_Contents_CC_xenopus	Information content of GO terms
Info_Contents_CC_yeast	Information content of GO terms
Info_Contents_CC_zebrafish	Information content of GO terms
Info_Contents_MF_anopheles	Information content of GO terms
Info_Contents_MF_arabidopsis	Information content of GO terms
Info_Contents_MF_bovine	Information content of GO terms
Info_Contents_MF_canine	Information content of GO terms
Info_Contents_MF_chicken	Information content of GO terms
Info_Contents_MF_chimp	Information content of GO terms
Info_Contents_MF_ecolik12	Information content of GO terms
Info_Contents_MF_ecsakai	Information content of GO terms
Info_Contents_MF_fly	Information content of GO terms
Info_Contents_MF_human	Information content of GO terms
Info_Contents_MF_malaria	Information content of GO terms
Info_Contents_MF_mouse	Information content of GO terms
Info_Contents_MF_pig	Information content of GO terms
Info_Contents_MF_rat	Information content of GO terms
Info_Contents_MF_rhesus	Information content of GO terms
Info_Contents_MF_worm	Information content of GO terms
Info_Contents_MF_xenopus	Information content of GO terms
Info_Contents_MF_yeast	Information content of GO terms
Info_Contents_MF_zebrafish	Information content of GO terms
mclusterSim	Pairwise Semantic Similarities for a List of Gene Clusters
mgeneSim	Pairwise Semantic Similarity for a List of Genes
mgoSim	Semantic Similarity Between two GO terms lists