\name{@ANNOBJPREFIX@PATH}
\alias{@ANNOBJPREFIX@PATH}
\title{Mappings between probe identifiers and KEGG pathway identifiers}
\description{
  KEGG (Kyoto Encyclopedia of Genes and Genomes) maintains pathway data
  for various organisms. @ANNOBJPREFIX@PATH maps probe identifiers to the
  identifiers used by KEGG for pathways in which the genes represented
  by the probe identifiers are involved
}
\details{
  Each KEGG pathway has a name and identifier. Pathway name for a given pathway
  identifier can be obtained using the KEGG data package that can either be
  built using AnnBuilder or downloaded from Bioconductor
  \url{http://www.bioconductor.org}.

  Graphic presentations of pathways are searchable at
  url http://www.genome.ad.jp/kegg/pathway.html by using pathway identifiers as
  keys.   

  Mappings were based on data provided by: @PATHSOURCE@  For fly, this
  required mapping these ids THROUGH the flybase IDs provided by NCBI.

}
\references{
  \url{http://www.genome.ad.jp/kegg/}
}
\examples{
        x <- @ANNOBJPREFIX@PATH
        # Get the probe identifiers that are mapped to a KEGG pathway ID
        mapped_probes <- mappedkeys(x)
        # Convert to a list
        xx <- as.list(x[mapped_probes])
        if(length(xx) > 0) {
          # Get the PATH for the first five probes
          xx[1:5]
          # Get the first one
          xx[[1]]
        }
}
\keyword{datasets}

